Update OmicSelector_create_formula.R #97
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| on: | |
| push: | |
| branches: master | |
| name: R package (Windows) | |
| jobs: | |
| Rpackage: | |
| runs-on: windows-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: OmicSelector | |
| miniconda-version: "latest" | |
| - name: Install enviorment | |
| shell: bash -l {0} | |
| run: | | |
| pwd | |
| conda update --all | |
| conda install --channel "conda-forge" --channel "anaconda" --channel "r" conda-pack r-base r-rjava rtools pandoc | |
| echo 'options(repos = c(CRAN = "https://packagemanager.rstudio.com/cran/latest"));' >> ~/.Rprofile | |
| Rscript -e 'update.packages(ask = F); install.packages(c("devtools","remotes"));' | |
| Rscript -e 'devtools::source_url("https://raw.githubusercontent.com/kstawiski/OmicSelector/master/vignettes/setup.R")' | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: R CMD INSTALL . | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Check loading | |
| shell: bash -l {0} | |
| run: | | |
| Rscript -e 'library(OmicSelector); sessionInfo();' | |
| - name: Pack env | |
| shell: bash -l {0} | |
| run: | | |
| conda pack -n OmicSelector -o OmicSelector_conda_pack_win.tar.gz | |
| - name: Delete prev Win release | |
| uses: dev-drprasad/[email protected] | |
| with: | |
| delete_release: true # default: false | |
| tag_name: release-win | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Release | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| files: | | |
| OmicSelector_conda_pack_win.tar.gz | |
| body: "OmicSelector for Windows - latest version packed as [conda-pack](https://conda.github.io/conda-pack/) and source code." | |
| name: Latest conda-pack (Windows) | |
| tag_name: release-win | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: 📂 Upload to deploy.konsta.com.pl | |
| uses: SamKirkland/[email protected] | |
| with: | |
| server: konsta.com.pl | |
| username: deploy | |
| password: ${{ secrets.PASSWORD }} | |
| server-dir: ./Deploy/OmicSelector-win/ |