Skip to content

lars-kolbowski/xiSPEC_ms_parser

Folders and files

NameName
Last commit message
Last commit date

Latest commit

author
Lars Kolbowski
Jun 22, 2022
96a414a · Jun 22, 2022
Dec 5, 2018
Dec 14, 2017
Dec 11, 2017
Dec 11, 2017
Oct 22, 2019
Sep 11, 2018
Dec 11, 2017
Nov 17, 2018
Oct 1, 2018
Dec 5, 2018
Nov 4, 2018
Nov 17, 2018
Dec 5, 2018
Jun 22, 2022
Dec 5, 2018
Jul 27, 2018
Dec 5, 2018
Jul 22, 2018
Mar 15, 2018
Jan 24, 2019
Jul 22, 2018
Mar 19, 2018
Mar 2, 2022
Oct 1, 2018

Repository files navigation

xiSPEC_ms_parser

This is no longer updated! Development is now happening on https://github.com/Rappsilber-Laboratory/xiSPEC_ms_parser

Back-end parser for xiSPEC mass spectrometry visualization tool.

Requirements:

python2.7

virtualenv

sqlite3

Installation

Clone git repository into your web-server directory (e.g. /var/www/html):

git clone https://github.com/Rappsilber-Laboratory/xiSPEC_ms_parser.git

cd into the repository:

cd xiSPEC_ms_parser

Create uploads directory:

mkdir ../uploads

Change owner of uploads directory to www-data:

sudo chown www-data:www-data ../uploads/

Change owner of log directory to www-data:

sudo chown www-data:www-data log

Create python virtualenv:

virtualenv --no-site-packages python_env

Activate virtualenv:

source python_env/bin/activate

Install dependencies:

pip install -r requirements.txt

pyteomics module has some changes so for the time being you need to reset to HEAD again after installing the dependencies

git reset --hard HEAD

Change owner of dbs directory (and sub directories) to www-data:

sudo chown -R www-data:www-data dbs

About

No description, website, or topics provided.

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published