Update copier template and workflow

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier
-_commit: e75f250
+_commit: 0233d57
 _src_path: https://github.com/lenskit/lk-project-template.git
 owner: Drexel University and contributors
 package_name: seedbank

.github/workflows/check-sources.yml

@@ -21,7 +21,7 @@ jobs:
           fetch-depth: 0
 
       - name: 🐍 Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.12"
           cache: "pip"
@@ -76,7 +76,8 @@ jobs:
 
       - name: 📐 Check types
         id: typecheck
-        uses: jakebailey/pyright-action@v1
+        uses: jakebailey/pyright-action@v2
         with:
+          version: PATH
           extra-args: seedbank
 

docs/conf.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 import os
 import sys
 

pyproject.toml

@@ -75,6 +75,9 @@ version_scheme = "guess-next-dev"
 channels = ["conda-forge"]
 deps = ["just"]
 
+[tool.coverage.run]
+relative_files = true
+
 [tool.ruff]
 line-length = 100
 target-version = "py310"

seedbank/__init__.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 """
 Common infrastructure for initializing random number generators.
 """

seedbank/_config.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 """
 Configuration file parsing support.
 """
@@ -19,7 +25,7 @@
     try:
         from tomllib import loads
     except ImportError:
         from toml import loads
 
     _log.debug("parsing TOML from {}", file)
     return loads(file.read_text())

seedbank/_keys.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 # pyright: reportUnnecessaryIsInstance=false
 from __future__ import annotations
 

seedbank/_state.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 from __future__ import annotations
 
 import numpy as np

seedbank/cupy.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 # type: ignore
 from __future__ import annotations
 

seedbank/jax.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 """
 JAX support.
 

seedbank/numba.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 import logging
 import warnings
 

seedbank/numpy.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 from __future__ import annotations
 
 import logging

seedbank/stdlib.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 import logging
 import random
 from typing import Optional

seedbank/tensorflow.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 # type: ignore
 import logging
 

seedbank/torch.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 # type: ignore
 import logging
 import warnings

tests/test_cupy_generator.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 from pytest import mark
 import numpy as np
 

tests/test_derive.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 from seedbank import derive_seed, initialize
 from seedbank._keys import make_key
 

tests/test_generator.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 import numpy as np
 
 from seedbank import numpy_rng

tests/test_init.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 from seedbank import _root_state, derive_seed, initialize, int_seed, root_seed
 from seedbank._keys import make_key
 

tests/test_init_file.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 import os.path
 from pathlib import Path
 

tests/test_jax.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 """
 stdlib python tests
 """

tests/test_numba.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 import numpy as np
 import pytest
 from seedbank import initialize

tests/test_process_seed.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 """
 Tests for processing seed material.
 """

tests/test_randomstate.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 import numpy as np
 from seedbank import numpy_random_state
 

tests/test_stdlib.py

@@ -1,3 +1,9 @@
+# This file is part of SeedBank.
+# Copyright (C) 2021-2023 Boise State University
+# Copyright (C) 2023-2024 Drexel University
+# Licensed under the MIT license, see LICENSE.md for details.
+# SPDX-License-Identifier: MIT
+
 """
 stdlib python tests
 """