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83 Open 668 Closed
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Issues list

Exit after emitting X trimmed reads
#844 opened May 30, 2025 by sjaenick
how to clip a variable *end* 5' adapter?
#841 opened May 20, 2025 by yfarjoun
4
Incomplete Adapter Trimming with Cutadapt 5.0
#839 opened May 1, 2025 by Anna-MarieSeelen
3
Amplicon primer trimming and Demultiplexing
#837 opened Apr 22, 2025 by HuGang-c
4
Question: How to trim multiple overhang adapter sequences and primers from paired-end Fastq files
#836 opened Apr 19, 2025 by SophMN
2
Issue about Read Count Differences When Using -e and --overlap Options
#835 opened Apr 7, 2025 by hyoj-seo
1
Problems when running highly parallel and writing GZ files
#833 opened Mar 18, 2025 by AlexanderBartholomaeus
3
Issue with Mismatch Settings in Cutadapt for Demultiplexing
#832 opened Feb 17, 2025 by KarolineBruunDegn
2
Removal of both 5' and 3' adaptors in paired-end reads
#831 opened Feb 5, 2025 by CorbinMach
2
Warn if adapters cannot be indexed
#823 opened Dec 5, 2024 by marcelm
Feature request: control info-file column separator
#816 opened Nov 6, 2024 by ramongallego
5
I have 5' and 3' adapter sequences for the paired read sequencing data? how should I remove them
#813 opened Oct 14, 2024 by sayeraselvan
14
Trimming reads generated by the template switching RT
#810 opened Sep 24, 2024 by Ahram-Ahn
1
[Question] linked adapters from Fasta file and discarding untrimmed pairs
#806 opened Sep 6, 2024 by marchoeppner
1
Suggestion: filter mode for polyA
#805 opened Aug 29, 2024 by NickNCL
2
Unable to trim primers from my interleaved fastq files
#800 opened Aug 16, 2024 by kdbchau
4
Should I use -a or -g when demultiplexing ONT reads with dual barcodes?
#799 opened Aug 9, 2024 by ashleyp1
3
Primer sequence trimming. Cutadapt does not cut all of them
#798 opened Aug 8, 2024 by Guillermouceda
1
Heterogeneity Spacers and Primers
#792 opened Jul 2, 2024 by luigallucci
5
Adapter matches in the middle of a read masked with N
#787 opened May 21, 2024 by hmutpw
2
cutadapt: error: cutadapt not able to trim the desired adapto
#785 opened May 11, 2024 by faizee-ali
3
"OverflowError: FASTA/FASTQ record does not fit into buffer" when trimming ONT reads
#783 opened May 1, 2024 by diego-rt
7
Remove the "Incomplete adapter sequence" warning
#780 opened Apr 23, 2024 by marcelm
Ensuring to find the correct file after Demultiplexing my 16S amplicon raw dataset with combinatorial dual indexes cutadapt command
#776 opened Apr 16, 2024 by JayalalKJ
5
Feature request: Support for multiple FastQ pairs
#775 opened Mar 27, 2024 by Redmar-van-den-Berg
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