Resources

Information:

• Penn Treebank Constituent Tags
• WordNet - A Lexical Database for English
• The Open Biological and Biomedical Ontologies
• CRAFT: The Colorado Richly Annotated Full Text Corpus
• GEXF File Format
• Cell Types
• Proteins

Software:

• ScalaNLP - Scientific Computing, Machine Learning, and Natural Language Processing
• Gephi - The Open Graph Viz Platform
• Walrus - Graph Visualization Tool
• JAMR - Abstract Meaning Representation Parser
• CharaParser - Processes Morphological Descriptions from the Biodiversity Domain
• Semantic MediaWiki - Turns a Wiki into a Powerful Knowledge Management System

Papers:

• Semantic Parsing using Distributional Semantics and Probabilistic Logic
• Chinese Whispers: an Efficient Graph Clustering Algorithm and its Application to Natural Language Processing Problems
• Toward an Architecture for Never-Ending Language Learning
• Philosophers are Mortal: Inferring the Truth of Unseen Facts
• Combined Distributional and Logical Semantics
• Modeling Biological Processes for Reading Comprehension
• Integrated Annotation for Biomedical Information Extraction
• Knowledge-based extraction of adverse drug events from biomedical text
• Using Information Content to Evaluate Semantic Similarity in a Taxonomy
• Compiling Pattern Matching to good Decision Trees
• Semantic Annotation of Biosystematics Literature without Training Examples
• DBpedia – A Large-scale, Multilingual Knowledge Base Extracted from Wikipedia

Courses:

• Natural Language Processing
• Social Network Analysis
• Machine Learning

Books:

• Introduction to Information Retrieval
• Logic in Computer Science: Modelling and Reasoning about Systems
• Introduction to Statistical Relational Learning
• Conceptual Mathematics - A First Introduction to Categories

Talks:

• Big Graph Data Science

I would like to thank David Hall for providing useful resources.