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Release peleffy 1.6.0#187

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martimunicoy wants to merge 18 commits into
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Release peleffy 1.6.0#187
martimunicoy wants to merge 18 commits into
martimunicoy:develfrom
NBDsoftware:devel

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martimunicoy and others added 18 commits March 26, 2024 13:21
…es when different bifuractions from branches appear. Now, the procedure is:

1. It detects the core.

2. Detects the different branches generated in the core.

3. Search for the different bifurcations inside each of the branches that come out the core, generated in rigid rings.

4. Create the rotamer groups, ordering them by their size. If a bifurcation in a branch is found, one group corresponds to the largest subbranch from the core, and the rotatable bonds left are distributed in different groups considering the ring where the bifurcation appears as the new core.
…penff toolkit and forcefields.

The simtk (package managing the physical magnitudes) is migrated to the newest version, used in the new versions of the toolkits.
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