[WIP] Simplify and clean up LobsterNeighbors #4482
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The
LobsterNeighborsinit method is currently messy, with file paths and objects; either of them can be used for initialization. This PR aims to fix this by adding the factory methodfrom_filesand rewriting the__init__method.PR will cause a breaking change in the API. The existing init method will be deprecated in January 2026.