In order to address the privacy concerns of patient data and to be able to disclose clinical trial data to other organizations, we have built a system that synthesizes patient data and cross-validates the synthetic data against the real data by running standard statistical techniques and machine learning algorithms. The code consists of a set of libraries used for loading sample data from the UCI reposirtory, preprocessing it and using it to synthesize a new set of patients.
A sample dataset is downloaded from the UCI Machine Learning Repository at: https://archive.ics.uci.edu/ml/datasets/Heart+Disease
use python 3.8 or later
All the required packages are specified in requirements.txt.
pip install -r requirements.txt
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Modify uci_config.py or use it as it for using the sample dataset from uci heart disease
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python uci_demo.py
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the outputs ncluding the synthesized data and the results from cross-validation will be in output_uci/
See CONTRIBUTING.
Jacob Aptekar (Medidata Solutions)
Mandis Beigi (Medidata Solutions)
Pierre-Louis Bourlon (Medidata Solutions)
Jason Mezey (Cornell University)
Afrah Shafquat (Medidata Solutions)
See the factbook.
Mandis Beigi at AcornAI (Medidata Solutions Inc., a Dassault Systemes Company)
