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POC: GUI layout for recOrder v1.0.0#442

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ziw-liu wants to merge 57 commits intomainmehta-lab/recOrder:mainfrom v1-gui-layoutmehta-lab/recOrder:v1-gui-layoutCopy head branch name to clipboard

+818-182

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Commits on Sep 28, 2023

• draft new main widget layout

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Commits on Sep 29, 2023

• remove redundant slider

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• hack: semi-automated config magicgui

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Commits on Oct 6, 2023

• replace typing.List with the builtin generic

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Commits on Oct 9, 2023

• potential fix for python 3.9

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• watch zarr poc

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Commits on Oct 10, 2023

• test watching when writing larger images

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• Dynamic layout of reconstruction wizard (#448)

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• generate example settings with revised model

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• skip reconstruction_settings during GUI generation

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• fix settings tests

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• fix roundtrip io tests

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• update comput-tf tests and logic

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• update compute-tf tests

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• update reconstruction

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Commits on Oct 11, 2023

• final tests passing

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• Merge pull request #449 from mehta-lab/revise-settings

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• unused import

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• first steps towards reconstruction button

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• minimally working GUI -> CLI

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• display results in viewer

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• annotate types

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• save output to a new file path

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• Merge pull request #450 from mehta-lab/reconstruct-button

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• add in-progress cb

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• tmp inputs

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• basic listener

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Commits on Oct 12, 2023

• checkpoint create-then-fill strategy

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• assume finite time points

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• setup reconstruction queue

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• put tasks in the queue

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• Merge branch 'main' into listen-to-zarr

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• fix the queue

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• T and Z sweep acquisition script

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• integrate with the demo writer

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• qt slot for callback

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• Merge pull request #451 from mehta-lab/listen-to-zarr

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Commits on Oct 13, 2023

• Merge branch 'v1-gui-layout' into acquire-z-stack

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• move the viewing flag forward

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• slow down and acquire from camera

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• Merge branch 'v1-gui-layout' into acquire-z-stack

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• quit worker after finished

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• in-progress testing

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• Merge branch 'acquire-z-stack' of https://github.com/mehta-lab/recOrder into acquire-z-stack

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• add pyqtslot

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• create array before acquisition

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• fix bug

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• fix shape

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• xy bug

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• typo fix

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• put into queue in a separate thread

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• Merge remote-tracking branch 'origin/acquire-z-stack' into acquire-z-stack

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• attempt to quit worker thread upon close

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• quit first

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• changes during final push to demo

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• Merge branch 'acquire-z-stack' of https://github.com/mehta-lab/recOrder into acquire-z-stack

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Commits on Nov 1, 2023

• Merge pull request #453 from mehta-lab/acquire-z-stack

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