Add default param to args.celltype_ppi

mims-harvard · Apr 3, 2024 · 79e8c3a · 79e8c3a
1 parent cee1abe
commit 79e8c3a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/finetune_pinnacle/prepare_txdata.py b/finetune_pinnacle/prepare_txdata.py
@@ -106,7 +106,7 @@ def main():
     import argparse
 
     parser = argparse.ArgumentParser()
-    parser.add_argument("--celltype_ppi", type=str, help="Filename (prefix) of cell type PPI.")
+    parser.add_argument("--celltype_ppi", type=str, default="../data/networks/ppi_edgelists/", help="Filename (prefix) of cell type PPI.")
     parser.add_argument('--disease', type=str)
     parser.add_argument('--evidence_dir', type=str) # Download OpenTargets ChEMBL evidence
     parser.add_argument('--all_drug_targets_path', type=str, default="../data/therapeutic_target_task/all_approved.csv")