v1.9.0

Added

• Added track.annotate() method

Changed

• Changed Circos.clear_savefig to pycirclize.config.clear_savefig

v1.8.0

Added

• Added track.raster() method

Fixed

• Set clip_on=False to enable Patch to be displayed outside of Axes (#80)
• Fixed unexpected ValueError due to rounding error

v1.7.2

Added

• Added recipe docs for comparative genomics

Fixed

• Set encoding="utf-8" explicitly to avoid Windows default encoding issue

v1.7.1

Fixed

• Fixed chord links calc bug in Matrix.parse_fromto_table() method (#75)

v1.7.0

Changed

• Dropped python3.8 support
• Switched package manager poetry to rye

Fixed

• Fixed to ignore features that have no location
• Fixed wrong return type of get_seqid2seq() method

v1.6.0

Added

• Added clear_savefig class variable to enable rendering figure in notebook even when savefig() method is called
• Added is_pseudo_feature() utils function
• Added label & label_kws argument to circos.colorbar() method to enable change colorbar label properties (#71)

v1.5.0

Added

• Added vmin argument to Circos.radar_chart() method

Changed

• Changed Circos init argument sectors to enable set range tuple
• Removed Circos init argument sector2start_pos

Fixed

• Fixed sector range error bug due to rounding error (#67, #27)

v1.4.0

Added

• Added Circos.radar_chart() static method for radar chart plot
• Added Circos.chord_diagram() method as an alias for Circos.initialize_from_matrix()
• Added figsize argument to circos.plotfig() & circos.savefig() method

Changed

• Changed to ignore min_range & max_range options in Genbank and Gff genomic parser class

v1.3.0

Added

• Added show_confidence() method to TreeViz class (#48)

Fixed

• Fixed too many points in vector curves to reduce SVG file size (#56)
• Fixed Matrix.parse_fromto_table() to ignore 0 values and not throw an ZeroDivisionError (#49)

v1.2.0

Added

• Added circos.link_line() method (#45)

Fixed

• Fixed error caused by removal of strand property in SeqFeature (BioPython v1.82)