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Wavelet analysis of genomic data from admixed populations

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adwave

Wavelet analysis of genomic data from admixed populations

adwave is an R package that implements wavelet-based approaches for describing population admixture.

adwave uses Principal Components Analysis (PCA) to define population structure and produce a localized admixture signal for each individual. Wavelet summaries of the PCA output describe variation present in the data and can be related to population-level demographic processes.

For more details, see:

J Sanderson, H Sudoyo, TM Karafet, MF Hammer and MP Cox. 2015. Reconstructing past admixture processes from local genomic ancestry using wavelet transformation. Genetics 200:469-481.

Please download and install adwave directly from CRAN.

Author: Jean Sanderson
Maintainer: Murray Cox

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Wavelet analysis of genomic data from admixed populations

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