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e72559d · Jun 11, 2021

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seqStats

This Perl program calculates basic summaries of fasta sequence files.

INSTALLATION

seqStats has no dependencies other than Perl itself.

USAGE

Program usage is as follows:

seqStats FASTA_input_file
Optional flags:
-c|contig INT     limit output to contigs larger than INT (default: 500 bp)
-d|distribution   return a file listing the sizes of all input sequences

EXAMPLE

seqStats test.fna -c 4 -d

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Calculate sequence statistics of fasta files

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