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31 Open 37 Closed
31 Open 37 Closed
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Issues list

switch to softclip for primary bam alignment
#161 opened May 22, 2025 by anoronh4
agfusion clinical failing due to NA bug Something isn't working
#158 opened May 20, 2025 by anoronh4
@pintoa1-mskcc
multiple fastqs from the same sample are not handled correctly bug Something isn't working
#157 opened May 20, 2025 by anoronh4
1
multiqc outputs have incorrect output bug Something isn't working
#156 opened May 19, 2025 by anoronh4
1
multiqc hanging indefinitely on crater2 bug Something isn't working
#155 opened May 19, 2025 by anoronh4
1
Add flag to final fusion output to state whether a different transcript combination is in frame enhancement New feature or request
#153 opened May 12, 2025 by pintoa1-mskcc
@pintoa1-mskcc
STARFUSION takes up a lot of resources bug Something isn't working
#152 opened May 9, 2025 by anoronh4
combine qc from different forte runs enhancement New feature or request
#146 opened Apr 9, 2025 by anoronh4
1
add PER_TARGET_COVERAGE to hsmetrics enhancement New feature or request
#144 opened Mar 14, 2025 by anoronh4
Add portcullis enhancement New feature or request
#140 opened Mar 12, 2025 by anoronh4
1
fillouts not running bug Something isn't working
#134 opened Jan 9, 2025 by anoronh4
Delay in tasks that are cached with storeDir bug Something isn't working
#131 opened Nov 4, 2024 by anoronh4
@anoronh4
references only run enhancement New feature or request
#130 opened Oct 16, 2024 by anoronh4
samplesheet check fails when fastq_2 is missing bug Something isn't working
#123 opened Sep 10, 2024 by anoronh4
fingerprint enhancement New feature or request
#122 opened Aug 30, 2024 by anoronh4
1
TMPDIR not passed into bash script bug Something isn't working
#121 opened Aug 16, 2024 by anoronh4
add preseq qc enhancement New feature or request
#120 opened Aug 13, 2024 by anoronh4
fix dockerfile
#106 opened Apr 14, 2024 by anoronh4
1
orphaned parameter params.read_length backburner bug Something isn't working
#104 opened Jan 23, 2024 by anoronh4
Losing unmapped reads after alignment
#92 opened Sep 13, 2023 by anoronh4
Fix pytest backburner
#64 opened Aug 10, 2023 by anoronh4
StarFusion results not reproducible
#63 opened Aug 3, 2023 by pintoa1-mskcc
1
estimate strand specificity enhancement New feature or request
#57 opened Jul 18, 2023 by anoronh4
Add splicing analysis backburner
#27 opened Mar 29, 2023 by anoronh4
arriba visualization backburner
#24 opened Mar 21, 2023 by anoronh4
5
ProTip! Updated in the last three days: updated:>2025-05-25.