Skip to content
@nanoporetech

Oxford Nanopore Technologies

Direct DNA/RNA analysis for anyone, anywhere.

Pinned Loading

  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 654 82

  2. remora remora Public

    Methylation/modified base calling separated from basecalling.

    Python 173 22

  3. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 456 81

  4. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 148 20

  5. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 183 26

  6. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 412 124

Repositories

Showing 10 of 91 repositories
  • ont-output-specifications Public

    Specifications for output files from MinKNOW, dorado and others

    nanoporetech/ont-output-specifications’s past year of commit activity
    Python 0 0 0 0 Updated May 21, 2025
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 148 20 33 3 Updated May 20, 2025
  • dorado-docs Public

    Dorado Documentation

    nanoporetech/dorado-docs’s past year of commit activity
    Python 5 0 0 0 Updated May 19, 2025
  • ont-spectre Public
    nanoporetech/ont-spectre’s past year of commit activity
    Python 8 1 5 1 Updated May 2, 2025
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 8 3 2 1 Updated Apr 29, 2025
  • minknow_api Public

    Protobuf and gRPC specifications for the MinKNOW API

    nanoporetech/minknow_api’s past year of commit activity
    Python 63 13 30 1 Updated Apr 25, 2025
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 654 82 85 (1 issue needs help) 5 Updated Apr 16, 2025
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 188 13 172 (1 issue needs help) 1 Updated Apr 15, 2025
  • bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    nanoporetech/bonito’s past year of commit activity
    Python 412 124 6 3 Updated Apr 11, 2025
  • vbz_compression Public

    VBZ compression plugin for nanopore signal data

    nanoporetech/vbz_compression’s past year of commit activity
    C++ 40 MPL-2.0 9 21 1 Updated Apr 7, 2025
View all repositories