Remove export v1 #3325
jameshadfieldci.yaml
on: pull_request
Matrix: pytest-cram
mypy
54s
pyright
13s
build-docs
/
build
2m 28s
check-docs
40s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
rebuild-docker-image
0s
Annotations
24 errors and 46 warnings
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pathogen-repo-ci (wnv)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (wnv)
Process completed with exit code 1.
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pathogen-repo-ci (wnv)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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test (python=3.11 biopython=1.82)
Process completed with exit code 1.
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test (python=3.11 biopython=1.80)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.11 biopython=1.80)
Process completed with exit code 1.
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test (python=3.11 biopython=latest)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.11 biopython=latest)
Process completed with exit code 1.
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test (python=3.9 biopython=1.80)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.9 biopython=1.80)
Process completed with exit code 1.
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test (python=3.9 biopython=1.82)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.9 biopython=1.82)
Process completed with exit code 1.
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test (python=3.9 biopython=latest)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.9 biopython=latest)
Process completed with exit code 1.
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test (python=3.10 biopython=1.82)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.10 biopython=1.82)
The operation was canceled.
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test (python=3.10 biopython=latest)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.10 biopython=latest)
The operation was canceled.
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test (python=3.10 biopython=1.80)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.10 biopython=1.80)
The operation was canceled.
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test (python=3.12 biopython=1.82)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.12 biopython=1.82)
The operation was canceled.
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test (python=3.12 biopython=latest)
The job was canceled because "_3_11_1_82" failed.
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test (python=3.12 biopython=latest)
The operation was canceled.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (wnv)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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test (python=3.11 biopython=1.82)
Cache not found for keys: 2025-02-13-linux-64-augur-args-a68861c-root-dcc80ee-bin-[object Promise]
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test (python=3.11 biopython=1.80)
Cache not found for keys: 2025-02-13-linux-64-augur-args-23ab9eb-root-dcc80ee-bin-[object Promise]
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test (python=3.11 biopython=latest)
Cache not found for keys: 2025-02-13-linux-64-augur-args-108fdcc-root-dcc80ee-bin-[object Promise]
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test (python=3.9 biopython=1.80)
Cache not found for keys: 2025-02-13-linux-64-augur-args-41b63b5-root-dcc80ee-bin-[object Promise]
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test (python=3.9 biopython=1.82)
Cache not found for keys: 2025-02-13-linux-64-augur-args-ec18f6c-root-dcc80ee-bin-[object Promise]
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test (python=3.9 biopython=latest)
Cache not found for keys: 2025-02-13-linux-64-augur-args-33aa3e3-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (avian-flu)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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test (python=3.10 biopython=1.82)
Cache not found for keys: 2025-02-13-linux-64-augur-args-4090700-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (ebola)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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test (python=3.10 biopython=latest)
Cache not found for keys: 2025-02-13-linux-64-augur-args-bcb2f62-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (ebola)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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test (python=3.10 biopython=1.80)
Cache not found for keys: 2025-02-13-linux-64-augur-args-782e6c7-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (mumps)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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test (python=3.12 biopython=1.82)
Cache not found for keys: 2025-02-13-linux-64-augur-args-9ea3c67-root-dcc80ee-bin-[object Promise]
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test (python=3.12 biopython=latest)
Cache not found for keys: 2025-02-13-linux-64-augur-args-5947309-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (ncov)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (ncov)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (zika)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (zika)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (mpox)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (mpox)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (oropouche)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (oropouche)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci-v0 (seasonal-flu)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (measles)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (measles)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci-v0 (tb)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (tb)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (seasonal-cov)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (seasonal-cov)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (dengue)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (dengue)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (rabies)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (rabies)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (yellow-fever)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (yellow-fever)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci (lassa)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci (lassa)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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pathogen-repo-ci-v0 (rsv)
Cache not found for keys: 2025-02-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise]
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pathogen-repo-ci-v0 (rsv)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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output-avian-flu
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96.7 KB |
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output-dengue
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1.16 MB |
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output-ebola
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111 KB |
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output-lassa
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1.5 MB |
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output-measles
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3.86 MB |
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output-mpox
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12.8 MB |
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output-mumps
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340 KB |
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output-ncov
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714 KB |
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output-oropouche
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507 KB |
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output-rabies
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4.96 MB |
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output-rsv
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9.48 MB |
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output-seasonal-cov
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1.67 MB |
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output-seasonal-flu
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54.3 KB |
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output-tb
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5.02 MB |
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output-yellow-fever
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2.1 MB |
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output-zika
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746 KB |
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