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Pull requests: nf-core/mag

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Pull requests list

Important! Template update for nf-core/tools v3.3.1
#823 opened Jun 3, 2025 by nf-core-bot Loading…
Replace pool read includes with cat fastq modules for improved handling of single and paired reads
#819 opened May 29, 2025 by Brijeshthummar02 Loading…
1 of 11 tasks
4
Issue #817: Restructure local module and subworkflows into dedicated directories
#818 opened May 29, 2025 by Brijeshthummar02 Loading…
1 of 11 tasks
11
Replace Bowtie2 custom modules with official nf-core ones
#754 opened Jan 24, 2025 by jfy133 • Draft
1 of 15 tasks
5
Use gtdb r220 in full test
#743 opened Jan 9, 2025 by jfy133 • Draft
11 tasks
5
Longread only functionality ready to review
#718 opened Nov 28, 2024 by muabnezor Loading…
11 tasks done
1
193
Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs
#688 opened Oct 10, 2024 by vagkaratzas • Draft
1 of 11 tasks
1
24
Config restructure
#621 opened May 30, 2024 by jfy133 • Draft
5 of 22 tasks
9
Added test_nothing nf-test and updated CI
#620 opened May 23, 2024 by CarsonJM • Draft
11 tasks
3
Adding pipeline nf-tests to nf-core/mag ready to review
#550 opened Dec 13, 2023 by CarsonJM • Draft
10 tasks
@CarsonJM
2
Added ability to auto-create samplesheet for nf-core/phageannotator enhancement New feature or request ready to review
#543 opened Nov 20, 2023 by CarsonJM • Draft
7 of 10 tasks
@CarsonJM
32
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