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45 Open 267 Closed
45 Open 267 Closed
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Issues list

Migrate local FUSIONREPORT_DETECT to nf-core/modules good first issue Good for newcomers
#630 opened Mar 14, 2025 by atrigila
Migrate local FUSIONINSPECTOR_FUSIONINSPECTOR to nf-core/modules good first issue Good for newcomers
#629 opened Mar 14, 2025 by atrigila
Migrate local CTATSPLICING_STARTOCANCERINTRONS to nf-core/modules good first issue Good for newcomers
#628 opened Mar 14, 2025 by atrigila
Migrate local arriba/visualization to nf-core/modules good first issue Good for newcomers
#627 opened Mar 14, 2025 by atrigila
Finish https://github.com/nf-core/modules/pull/7255 good first issue Good for newcomers
#626 opened Mar 12, 2025 by rannick
Error: Invalid declaration val username
#623 opened Mar 4, 2025 by yinfeitan
1
Starfusion download crashing bug Something isn't working
#622 opened Feb 27, 2025 by apeltzer
Pipeline crashes when building references for tool starfusion bug Something isn't working
#621 opened Feb 24, 2025 by ReposGB
2
rnafusion using incorrect wget bug Something isn't working
#618 opened Feb 6, 2025 by dslarm
@rannick
Error building the databases(HGNC,FUSIONREPORT_DOWNLOAD,FUSIONCATCHER_DOWNLOAD, STAR_GENOMEGENERATE)
#614 opened Jan 23, 2025 by usama-khan1998
1
single end, input fail fusion calling bug Something isn't working
#612 opened Jan 22, 2025 by charbel2998
1
pipeline crash when building references bug Something isn't working
#608 opened Jan 17, 2025 by ReposGB
6
Add in documentation where to find the references for ensembl 112
#606 opened Jan 7, 2025 by rannick
reads_junction in STARFUSION_WORKFLOW should not join with reads
#595 opened Dec 20, 2024 by rannick
Create nf-test for STARFUSION_DETECT using a junction file as input
#593 opened Dec 19, 2024 by rannick
upload fusioncatcher 1.34 to quay.io/galaxy
#590 opened Dec 18, 2024 by rannick
@rannick
Use wave containers for fusioncatcher
#589 opened Dec 18, 2024 by rannick
@rannick
Create small reference for fusioncatcher (chr4)
#580 opened Dec 9, 2024 by alanmmobbs93
2
Language server correct of arriba module bug Something isn't working
#576 opened Dec 6, 2024 by rannick
@rannick
Move local modules to nf-core/modules
#575 opened Dec 6, 2024 by grst
Add small test data in test-datasets
#556 opened Nov 29, 2024 by atrigila
Correct language server issues
#552 opened Nov 28, 2024 by atrigila
Create nf-tests for "fusioninspector_workflow" subworkflow
#532 opened Nov 22, 2024 by nschcolnicov
Create nf-tests for "vcf_collect" module
#529 opened Nov 22, 2024 by nschcolnicov
5
Create nf-tests for "fusioncatcher": "detect" and "download" modules
#521 opened Nov 22, 2024 by nschcolnicov
4
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