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4 changes: 2 additions & 2 deletions modules/nf-neuro/preproc/normalize/meta.yml
Original file line number Diff line number Diff line change
Expand Up @@ -35,12 +35,12 @@ input:
- bval:
type: file
description: Text file containing b-values
pattern: "*.{.bval}"
pattern: "*.bval"

- bvec:
type: file
description: Text file containing b-vectors
pattern: "*.{.bvec}"
pattern: "*.bvec"

output:
- meta:
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2 changes: 1 addition & 1 deletion modules/nf-neuro/registration/synthregistration/meta.yml
Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ output:
- warped_image:
type: file
description: Warped image
pattern: "*.{nii,.nii.gz}"
pattern: "*.{nii,nii.gz}"

- transfo_image:
type: list
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4 changes: 2 additions & 2 deletions subworkflows/nf-neuro/registration/meta.yml
Original file line number Diff line number Diff line change
Expand Up @@ -80,15 +80,15 @@ output:
Channel containing the image transformation files. This channel contains the necessary transformation
files (warp and affine) to perform the anatomical -> dwi space registration. Those files could be
used in the future to bring anatomical labels into DWI space for connectomics.
Structure: [ val(meta), [ path(warp), <path(affine)> ] ]
Structure: [ val(meta), [ path(warp), path(affine) ] ]
pattern: "*.{nii,nii.gz,mat}"
- transfo_trk:
type: file
description: |
Channel containing the tractogram transformation files. This channel contains the necessary transformation
files (inverseAffine, inverseWarp) to perform the dwi -> anatomical space registration. Those files could
be used to register tractograms or bundle in the subject's anatomical space.
Structure: [ val(meta), [ <path(inverseAffine)>, path(inverseWarp) ]
Structure: [ val(meta), [ path(inverseAffine), path(inverseWarp) ]
pattern: "*.{nii,nii.gz,mat}"
- ref_warped:
type: file
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4 changes: 2 additions & 2 deletions subworkflows/nf-neuro/tractoflow/meta.yml
Original file line number Diff line number Diff line change
Expand Up @@ -168,12 +168,12 @@ output:
type: file
description: |
Transformation matrix from the anatomical space to the diffusion space.
Structure: [ val(meta), [<path(warp)>, path(affine)] ]
Structure: [ val(meta), [path(warp), path(affine)] ]
- diffusion_to_anatomical:
type: file
description: |
Transformation matrix from the diffusion space to the anatomical space.
Structure: [ val(meta), [path(affine), <path(warp)>] ]
Structure: [ val(meta), [path(affine), path(warp)] ]
- t1_native:
type: file
description: |
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