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[ENH] Get default data from subworkflow in meta.yml#306

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AlexVCaron merged 7 commits intonf-neuro:mainfrom
arnaudbore:get_default_from_meta
Feb 16, 2026
Merged

[ENH] Get default data from subworkflow in meta.yml#306
AlexVCaron merged 7 commits intonf-neuro:mainfrom
arnaudbore:get_default_from_meta

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@arnaudbore
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Describe your changes

Get the default options from meta data using an extra subworkflow

List test packages used by your subworkflow

Checklist before requesting a review

  • Create the tool:
    • Edit ./subworkflows/nf-neuro/<category>/<tool>/main.nf
    • Edit ./subworkflows/nf-neuro/<category>/<tool>/meta.yml
  • Generate the tests:
    • Edit ./subworkflows/nf-neuro/<category>/<tool>/tests/main.nf.test
    • Run the tests to generate the main.nf.test.snap snapshots
  • Ensure the syntax is correct :
    • Run prettier and editorconfig-checker to fix common syntax issues
    • Run nf-core subworkflows lint and fix all errors
    • Ensure your variables have good, clear names

@arnaudbore arnaudbore requested review from a team, AlexVCaron and gagnonanthony February 13, 2026 15:20
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@AlexVCaron AlexVCaron left a comment

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Very nice ! I like that a lot 😄 A few comments. I'll get on the documentation generation before the end of day

@arnaudbore arnaudbore changed the title [ENH][WIP] Get default data from subworkflow in meta.yml [ENH] Get default data from subworkflow in meta.yml Feb 16, 2026
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@gagnonanthony gagnonanthony left a comment

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LGTM! Only a small comment 😄

@AlexVCaron AlexVCaron added this pull request to the merge queue Feb 16, 2026
Merged via the queue into nf-neuro:main with commit c3da870 Feb 16, 2026
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