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Merged
arnaudbore merged 3 commits into from
Feb 10, 2026
Merged

Improve API tables alignment #59

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eaf6767
add styling for incoming API table alignments
AlexVCaron Feb 7, 2026
6075136
use new nf-neuro docs deployment
AlexVCaron Feb 8, 2026
1eafe74
switch to new official poetry action. switch to xargs since already i…
AlexVCaron Feb 9, 2026
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33 changes: 21 additions & 12 deletions .github/workflows/deploy.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,14 +20,21 @@ jobs:
ref: main
path: nf-neuro
fetch-depth: 0
- name: Setup python
uses: actions/setup-python@v5.4.0
- name: Setup Python
uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
with:
python-version: "3.10"
cache: pip
- name: Install dependencies
python-version: "3.12"
- uses: snok/install-poetry@v1
with:
version: "1.8.5"
virtualenvs-create: true
virtualenvs-in-project: true
virtualenvs-path: .venv
installer-parallel: true
- name: Install project docs extra with poetry
working-directory: nf-neuro
run: |
pip install pyyaml jinja2
poetry install --extras docs
- name: Generate markdown
id: generate-module
run: |
Expand All @@ -37,21 +44,23 @@ jobs:
local module_name=$(basename "$(dirname "$file")")
local category=$(basename "$(dirname "$(dirname "$file")")")
mkdir -p modules/$category
cd nf-neuro
python docs/astro/convert_module.py ../$(dirname "$file") ${{ github.sha }} ../modules/${category}/${module_name}.md
poetry -C nf-neuro run nf-neuro-convert-module \
$(dirname "$file") ${{ github.sha }} \
modules/${category}/${module_name}.mdx
}
function convert_subworkflow () {
local file="$1"
local sbwf_name=$(basename "$(dirname "$file")")
cd nf-neuro
python docs/astro/convert_subworkflow.py ../$(dirname "$file") ${{ github.sha }} ../subworkflows/${sbwf_name}.md
poetry -C nf-neuro run nf-neuro-convert-subworkflow \
$(dirname "$file") ${{ github.sha }} \
subworkflows/${sbwf_name}.mdx
}
export -f convert_module
export -f convert_subworkflow

mkdir -p modules/ subworkflows/
parallel --jobs $(nproc) convert_module ::: nf-neuro/modules/nf-neuro/**/meta.yml
parallel --jobs $(nproc) convert_subworkflow ::: nf-neuro/subworkflows/nf-neuro/**/meta.yml
printf '%s\n' nf-neuro/modules/nf-neuro/**/meta.yml | xargs -P $(nproc) -I {} bash -c 'convert_module "$@"' _ {}
printf '%s\n' nf-neuro/subworkflows/nf-neuro/**/meta.yml | xargs -P $(nproc) -I {} bash -c 'convert_subworkflow "$@"' _ {}
- name: Pack into artifact
uses: actions/upload-artifact@v4
with:
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11 changes: 11 additions & 0 deletions src/styles/custom.css
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Expand Up @@ -60,3 +60,14 @@ starlight-tabs {
background-color: light-dark(var(--color-gray-100), var(--color-gray-700));
padding: 10px;
}

.module-input-table tr td:not(:nth-child(3)),
.module-output-table tr td:not(:nth-child(3)),
.module-args-table tr td:not(:nth-child(3)),
.module-tools-table tr td:not(:nth-child(2)),
.subworkflow-input-table tr td:not(:nth-child(3)),
.subworkflow-output-table tr td:not(:nth-child(3)),
.subworkflow-args-table tr td:not(:nth-child(3)){
width: 1%;
white-space: nowrap;
}