Helena Reyes-Gopar, Jez L. Marston, Bhavya Singh, Matthew Greenig, Jonah Lin, Mario A. Ostrowski, Kipchoge N. Randall Jr., Santiago Sandoval-Motta, Nicholas Dopkins, Elsa Lawrence, Morgan M. O’Mara, Tongyi Fei, Rodrigo R. R. Duarte, Timothy R. Powell, Enrique Hernández-Lemus, Luis P. Iñiguez, Douglas F. Nixon, Matthew L. Bendall
Cell Reports Methods. doi:10.1016/j.crmeth.2025.101086
We recommend using the mamba package and environment management system,
a reimplementation of conda.
- Install mamba (recommended)
- Install conda
Bioconda lets you install thousands of software packages related to biomedical research using the conda package manager.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install stellarscopeTo create a new environment, run:
mamba create --name myenvname stellarscope
with myenvname being a reasonable name for the environment.
- Stellarscope Tutorial by Helena Reyes Gopar (@hreypar)
This project is licensed under the MIT License - see the LICENSE file for details.
This project was developed in the Nixon Lab at Weill Cornell Medicine.
Funding for Stellarscope comes from US National Institutes of Health (NIH) grants CA260691, CA206488, R21HG011513, R56AG078970, and UM1AI164559.
A special thanks to everyone who has contributed to this project.
Stellarscope is maintained by:
- Nixon Lab (Institute of Translational Research, The Feinstein Institutes for Medical Research, Manhasset, NY, United States)
- Bendall Lab (Computational Biology Institute, Department of Biostatistics and Bioinformatics, Milken Institute School of Public Health, The George Washington University, Washington, DC, United States)
Questions and comments are welcome and should be sent to our stellarscope discussions page. Report software issues and bugs on the issues page.