Detect transposon insertion polymorphisms by TRACKPOSON
Carpentier, M.C., Manfroi, E., Wei, F.J., Wu, H.P., Lasserre, E., Llauro, C., Debladis, E., Akakpo, R., Hsing, Y.I. and Panaud, O., 2019. Retrotranspositional landscape of Asian rice revealed by 3000 genomes. Nature communications, 10(1), pp.1-12.