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update cfour templates with ones that work
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ntBre committed Sep 15, 2024
1 parent cb7fd2d commit 976396a
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2 changes: 1 addition & 1 deletion docs/examples/pbs_cfour.toml
Original file line number Diff line number Diff line change
Expand Up @@ -15,5 +15,5 @@ module load openpbs
export WORKDIR=$PBS_O_WORKDIR
cd $WORKDIR
CFOUR_CMD=\"/ddn/home8/r2610/bin/c4ext_new.sh $NCPUS\"
CFOUR_CMD=\"/ddnlus/r2518/bin/c4ext_new.sh $NCPUS\"
"""
17 changes: 3 additions & 14 deletions docs/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -1163,7 +1163,7 @@ <h4 id=pbs><a href="#pbs">PBS</a></h4>
</tr>
<tr>
<td>CFOUR</td>
<td><code>"/ddn/home8/r2610/bin/c4ext_new.sh $NCPUS"</code></td>
<td><code>"/ddnlus/r2518/bin/c4ext_new.sh $NCPUS"</code></td>
</tr>
<tr>
<td>DFTB+</td>
Expand All @@ -1175,13 +1175,7 @@ <h4 id=pbs><a href="#pbs">PBS</a></h4>
<p>
MOPAC and DFTB+ have simple commands (just paths to executables here that
don't require quotes, but Molpro and CFOUR require additional arguments
separated by spaces. For MCSR users, note that the default CFOUR command
has not been updated following the Lustre migration and will thus not
work. I was going to update this, but that CFOUR script also contains many
references to the previous filesystem and won't work anyway. Thus,
consider this default only as an example. Real usage of CFOUR will require
a custom <code>queue_template</code> with an
updated <code>CFOUR_CMD</code> value.
separated by spaces.
</p>

<!-- These spaces are a disgusting hack to keep separate anchors for each
Expand Down Expand Up @@ -1288,14 +1282,9 @@ <h5 id=cfour-><a href="#cfour-">CFOUR </a></h5>
export WORKDIR=$PBS_O_WORKDIR
cd $WORKDIR

CFOUR_CMD=\"/ddn/home8/r2610/bin/c4ext_new.sh $NCPUS\"
CFOUR_CMD=\"/ddnlus/r2518/bin/c4ext_new.sh $NCPUS\"
"""</code></pre>

<p>
Again, for MCSR users, note that this example file will not run on
hpcwoods because of the outdated CFOUR path and script.
</p>

<h5 id=dftb+-><a href="#dftb+-">DFTB+ </a></h5>
<pre><code>queue_template = """
#!/bin/sh
Expand Down
2 changes: 1 addition & 1 deletion docs/tables/pbs.csv
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
Program,Default Command
MOPAC,<code>/ddnlus/r2518/Packages/mopac/build/mopac</code>
Molpro,<code>"molpro -t $NCPUS --no-xml-output"</code>
CFOUR,<code>"/ddn/home8/r2610/bin/c4ext_new.sh $NCPUS"</code>
CFOUR,<code>"/ddnlus/r2518/bin/c4ext_new.sh $NCPUS"</code>
DFTB+,<code>/ddnlus/r2518/.conda/envs/dftb/bin/dftb+</code>
13 changes: 1 addition & 12 deletions docs/template.html
Original file line number Diff line number Diff line change
Expand Up @@ -847,13 +847,7 @@ <h2>Table of Contents</h2>
<p>
MOPAC and DFTB+ have simple commands (just paths to executables here that
don't require quotes, but Molpro and CFOUR require additional arguments
separated by spaces. For MCSR users, note that the default CFOUR command
has not been updated following the Lustre migration and will thus not
work. I was going to update this, but that CFOUR script also contains many
references to the previous filesystem and won't work anyway. Thus,
consider this default only as an example. Real usage of CFOUR will require
a custom <code>queue_template</code> with an
updated <code>CFOUR_CMD</code> value.
separated by spaces.
</p>

<!-- These spaces are a disgusting hack to keep separate anchors for each
Expand Down Expand Up @@ -900,11 +894,6 @@ <h2>Table of Contents</h2>
head5(CFOUR )
code_block(examples/pbs_cfour.toml)

<p>
Again, for MCSR users, note that this example file will not run on
hpcwoods because of the outdated CFOUR path and script.
</p>

head5(DFTB+ )
code_block(examples/pbs_dftb.toml)

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