GitHub - nw11/pipelite-pipelines: Pipelite pipelines

These are Pipelite pipelines

Name		Name	Last commit message	Last commit date
Latest commit History 167 Commits
DEXSeq1		DEXSeq1
STAR+HOMER		STAR+HOMER
STAR		STAR
STAR_HOMER		STAR_HOMER
STAR_HOMER1		STAR_HOMER1
STAR_mouse		STAR_mouse
bam2bigwig		bam2bigwig
bam2fastq		bam2fastq
bam2fastq1		bam2fastq1
bismark		bismark
bismark_index_genome		bismark_index_genome
bismark_summary		bismark_summary
bowtie_express		bowtie_express
bsexpress		bsexpress
cuffdiff		cuffdiff
cufflinks1_make_datasource		cufflinks1_make_datasource
homerMakeTagDir		homerMakeTagDir
homerRNAseq		homerRNAseq
mergebams		mergebams
mergebams1		mergebams1
mergebismarkcounts		mergebismarkcounts
methylextract		methylextract
methylkit		methylkit
methylseekr		methylseekr
methylspike		methylspike
methylspikes1		methylspikes1
picardMarkDuplicates		picardMarkDuplicates
picardSortSam		picardSortSam
rnaseqqc		rnaseqqc
send_bam_to_ucsc_hub		send_bam_to_ucsc_hub
spikeassess		spikeassess
star_index_genome		star_index_genome
testthis		testthis
README.md		README.md

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