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Connectivity matching #126

Connectivity matching

Connectivity matching #126

Triggered via pull request February 19, 2025 03:56
Status Failure
Total duration 1m 54s
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gh-ci.yaml

on: pull_request
Matrix: main-tests
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2 errors and 10 warnings
main-tests (ubuntu-latest, 3.11)
Process completed with exit code 4.
main-tests (macos-latest, 3.11)
Process completed with exit code 4.
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb_data.py#L492
Type of "conect_graph" is partially unknown   Type of "conect_graph" is "Graph[Unknown]" (reportUnknownVariableType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb_data.py#L494
Type of "add_node" is partially unknown   Type of "add_node" is "(node_for_adding: Unknown, **attr: Unknown) -> None" (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb_data.py#L497
Type of "add_node" is partially unknown   Type of "add_node" is "(node_for_adding: Unknown, **attr: Unknown) -> None" (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb_data.py#L501
Type of "add_edge" is partially unknown   Type of "add_edge" is "(u_of_edge: Unknown, v_of_edge: Unknown, **attr: Unknown) -> None" (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb_data.py#L511
Type of "isomorphism" is unknown (reportUnknownVariableType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb_data.py#L511
Type of "vf2pp_isomorphism" is partially unknown   Type of "vf2pp_isomorphism" is "_dispatchable[(G1: Unknown, G2: Unknown, node_label: Any | None = None, default_label: Any | None = None), Unknown]" (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb_data.py#L521
Argument type is unknown   Argument corresponds to parameter "index_to_atomdef" in function "__init__" (reportUnknownArgumentType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_utils.py#L335
Type of "to_rdkit" is partially unknown   Type of "to_rdkit" is "((aromaticity_model: str = DEFAULT_AROMATICITY_MODEL, toolkit_registry: ToolkitRegistry = GLOBAL_TOOLKIT_REGISTRY) -> Mol) | Unknown" (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_utils.py#L335
Argument type is partially unknown   Argument corresponds to parameter "pklString" in function "__init__"   Argument type is "Mol | Unknown" (reportUnknownArgumentType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_utils.py#L344
Type of "set_atom_palette" is partially unknown   Type of "set_atom_palette" is "(draw_options: Unknown) -> Unknown" (reportUnknownVariableType)