v0.7.0
·
1470 commits
to main
since this release
What's Changed
- Fix docker image builds by @scottgigante-immunai in #758
- [Dimensionality reduction] Fix normalization in baselines by @scottgigante-immunai in #760
- downgrade gtfparse and polars by @scottgigante-immunai in #766
- Fix output headers order by @scottgigante-immunai in #769
- Convert references to bib by @scottgigante-immunai in #720
- fix typo in bibliography path by @scottgigante-immunai in #774
- More bibliography typos by @scottgigante in #775
- Pre-normalize dimensionality reduction datasets by @scottgigante-immunai in #768
- Add pymde to dimensionality reduction by @scottgigante-immunai in #767
- Fix flaky R installations in docker build by @scottgigante-immunai in #783
- save initial layer in X for adata_pre by @danielStrobl in #784
- Filter datasets by celltype by @scottgigante-immunai in #770
- Pass raw counts to neuralee by @scottgigante-immunai in #779
- Label projection describe datasets by @mxposed in #776
- Add missing DR references by @rcannood in #782
- Bugfix/lowercase GitHub repo owner by @scottgigante-immunai in #794
- Upgrade isort by @scottgigante-immunai in #795
- Update styler to 1.9.0 by @github-actions in #787
- [auto] Update docker version by @github-actions in #798
- Update bslib to 0.4.2 by @github-actions in #759
- add missing logfc decorator by @dbdimitrov in #796
- Add ALRA preprocessing identical to literature by @wes-lewis in #763
- run CI on PRs only with approving review by @scottgigante-immunai in #804
- add new workflow to add status by @scottgigante-immunai in #805
- Update bioc/scran to 1.26.2 by @github-actions in #799
- Specify PR number by @scottgigante-immunai in #808
- add magic with reverse norm order by @scottgigante-immunai in #797
- Bump pymde from 0.1.15 to 0.1.18 in /docker/openproblems-python-pytorch by @dependabot in #801
- Update scvi-tools requirement from ~=0.16 to ~=0.19 in /docker/openproblems-r-pytorch by @dependabot in #731
- Use graph and embedding metrics for feature and embedding subtask by @danielStrobl in #807
- Fix typo in dimensionality reduction dataset names by @lazappi in #802
- add new dataloaders by @danielStrobl in #792
- rmse -> distance correlation by @scottgigante-immunai in #811
- CPM -> CP10k by @scottgigante-immunai in #812
- change multimodal data integration task name to matching modalities by @LuckyMD in #778
- updated scib version by @danielStrobl in #793
- Daniel strobl hvg conservation fix by @danielStrobl in #785
Full Changelog: v0.6.1...v0.7.0