Update LISI docs #56
Open
Update LISI docs #56
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
lazappi
reviewed
Apr 14, 2025
| all full feature, embedding and kNN integration outputs via shortest path-based | ||
| distance computation on single-cell kNN graphs. The metric assesses whether clusters | ||
| of cells in a single-cell RNA-seq dataset are well-mixed across a categorical batch | ||
| variable. |
There was a problem hiding this comment.
Maybe this paragraph could be updated while you are at it? At the moment it's the same for cLISI and iLISI.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Describe your changes
Update LISI docs. Closes #49
Checklist before requesting a review
I have performed a self-review of my code
Check the correct box. Does this PR contain:
Proposed changes are described in the CHANGELOG.md
CI Tests succeed and look good!