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WIP: Add MLflow models #73

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@lazappi lazappi commented Aug 13, 2025

Describe your changes

Add MLflow models as methods. Builds on #67

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Bug fixes

  • Proposed changes are described in the CHANGELOG.md

  • CI Tests succeed and look good!

lazappi added 17 commits July 8, 2025 13:02
@lazappi
Add transcriptformer_mlflow method component
479437a
@lazappi
Adjust transcriptformer_mlflow dependencies
95ced9b
@lazappi
Output embedding in transcriptformer_mlflow
6e8dce2
@lazappi
Install transcriptformer requirements from file
440a18b
@lazappi
Add extracting model archive to transcriptformer
5332e00
@lazappi
Add transcriptformer_mlflow to benchmark workflow
b84a40a
@lazappi
Install openproblems package for transcriptformer
74be855
@lazappi
Style transcriptformer_mlflow script
8693f35
@lazappi
Increase transcriptformer memory label
b7dae0b
@lazappi
Add scvi_mlflow method
5d3c6e0
@lazappi
Add geneformer_mlflow method
0243f8d
@lazappi
Add scgpt_mlflow method
04d8a5d
@lazappi
Add uce_mlflow method
5c46c4c
@lazappi
Add unpack_directory() utils helper
9c82ff4
@lazappi
Add unpack helper to scgpt_mlflow
2a2a61b
@lazappi
Add unpack helper to scvi_mlflow
8143651
@lazappi
Merge remote-tracking branch 'origin/main' into feature/no-ref/add-ml…
f179613 
…flow-models

* origin/main:
  Adding new method: DRVI (#61)
  update scprint (#70)
  Adding a new metric BRAS(Batch Removal Adapted Silhouette) (#62)
@lazappi lazappi marked this pull request as draft August 29, 2025 06:38
@lazappi
Update scvi_mlflow
5e49b7c 
Changes to match label projection
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