Remove reticulate workaround (#12)

Author: rcannood

src/methods/scdesign3_nb/config.vsh.yaml

@@ -40,10 +40,7 @@ engines:
     image: openproblems/base_r:1
     setup:
       - type: r
-        github:
-          - SONGDONGYUAN1994/scDesign3
-        url:
-          - https://cran.r-project.org/src/contrib/Archive/reticulate/reticulate_1.40.0.tar.gz
+        bioc: scDesign3
 
 runners:
   - type: executable

src/methods/scdesign3_poisson/config.vsh.yaml

@@ -39,13 +39,8 @@ engines:
   - type: docker
     image: openproblems/base_r:1
     setup:
-      - type: apt
-        packages: [r-bioc-singlecellexperiment, git]
       - type: r
-        url:
-          - https://cran.r-project.org/src/contrib/Archive/reticulate/reticulate_1.40.0.tar.gz
-        github: 
-          - SONGDONGYUAN1994/scDesign3
+        bioc: [scDesign3, SingleCellExperiment]
 
 runners:
   - type: executable

src/metrics/ks_statistic_sc_features/config.vsh.yaml

@@ -66,8 +66,6 @@ engines:
           - xuranw/MuSiC
           - YingMa0107/CARD
           - SydneyBioX/scFeatures
-        url:
-          - https://cran.r-project.org/src/contrib/Archive/reticulate/reticulate_1.40.0.tar.gz
 
 runners:
   - type: executable

src/process_datasets/sc_features/config.vsh.yaml

@@ -35,8 +35,6 @@ engines:
       - type: r
         github:
         - SydneyBioX/scFeatures
-        url:
-          - https://cran.r-project.org/src/contrib/Archive/reticulate/reticulate_1.40.0.tar.gz
 
 runners:
   - type: executable