Center for Biomedical Image Computing & Analytics (CBICA)

All

73 repositories

NiChart_DLMUSE
Public
Python
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Other
•5•4•6•1•Updated Jun 3, 2025Jun 3, 2025
DLMUSE
Public
A repository that allows users to apply the DLMUSE method to their brain imaging data.
Python
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Other
•0•9•2•0•Updated Jun 3, 2025Jun 3, 2025
spare_score
Public
Compute SPARE scores to detect characteristic feature patterns
Python
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Other
•6•3•0•1•Updated Jun 3, 2025Jun 3, 2025
NiChart_Project
Public
Neuro Imaging Chart of AI-based Imaging Biomarkers
Python
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Other
•8•21•10•1•Updated Jun 3, 2025Jun 3, 2025
DLICV
Public
A repository that allows users to apply the DLICV method to their brain imaging data.
deeplearning medical-image-processing medical-image-analysis imagesegmentation nnunet
Python
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Other
•0•1•0•1•Updated Jun 3, 2025Jun 3, 2025
BIDS_NiChart_DLMUSE
Public
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•0•1•Updated Jun 2, 2025Jun 2, 2025
SPARE_SVM
Public
Python
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Other
•0•0•0•0•Updated May 30, 2025May 30, 2025
FigureGenerator
Public
This helps creating high quality figures for use in manuscripts and presentations.
screenshots medical-imaging figure-maker figures screenshot-generator
Python
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Other
•2•11•2•0•Updated May 14, 2025May 14, 2025
CCL_NMF_Prediction
Public
Prediction tool for 7 CCL_NMF component loadings
Python
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MIT License
•1•0•1•0•Updated Apr 28, 2025Apr 28, 2025
BrainMaGe
Public
Brain extraction in presence of abnormalities, using single and multiple MRI modalities
python machine-learning deep-learning pytorch neuroimaging segmentation nih brain-extraction skull-stripping pytorch-lightning
Python
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Other
•7•35•2•3•Updated Mar 21, 2025Mar 21, 2025
DLWMLS
Public
Python
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Other
•0•0•0•0•Updated Jan 18, 2025Jan 18, 2025
slurm_billing_report
Public
Prints out usage and charge for given Slurm account and time period.
Go
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GNU General Public License v3.0
•2•0•0•0•Updated Dec 6, 2024Dec 6, 2024
GBM_Survival_ReSPOND_2024
Public
MATLAB
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Other
•0•1•0•0•Updated Dec 2, 2024Dec 2, 2024
PredCRD
Public
Python
•1•0•2•0•Updated Nov 21, 2024Nov 21, 2024
MRISnapshot
Public
A QC tool for verification of datasets with MRI images and derived masks
Python
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MIT License
•1•4•0•0•Updated Sep 12, 2024Sep 12, 2024
NiChart_Viewer
Public
Visualization tool for Neuroimaging Chart (NiChart) imaging descriptors and biomarkers
nichart
Python
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Other
•0•1•0•0•Updated Sep 10, 2024Sep 10, 2024
NiChart_Workflows
Public
HTML
•3•1•1•1•Updated Aug 22, 2024Aug 22, 2024
SurrealGAN
Public
Python
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MIT License
•12•0•0•1•Updated Jul 19, 2024Jul 19, 2024
NiChart_Website
Public
The Landing page for the NiChart project
visualization machine-learning image-processing neuroimaging neuroimaging-analysis
JavaScript
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Other
•3•1•0•0•Updated May 25, 2024May 25, 2024
NiChart_Harmonize
Public
Statistical harmonization package in NiChart
nichart
Python
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MIT License
•0•1•1•0•Updated May 24, 2024May 24, 2024
TIP
Public
Translational Imaging Pipelines
Python
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Other
•3•1•2•0•Updated Feb 7, 2024Feb 7, 2024
NiChart_Tissue_Segmentation
Public
Brain tissue segmentation using FSL FAST and DLICV
Python
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Other
•0•2•0•0•Updated Feb 2, 2024Feb 2, 2024
niCHART
Public
The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual
mri neuroimaging aging
Python
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Other
•8•20•17•6•Updated Jan 22, 2024Jan 22, 2024
BRIDGEPORT
Public
Source for https://www.cbica.upenn.edu/bridgeport and documentation of the GWAS dataset
JavaScript
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Other
•0•0•0•0•Updated Jan 3, 2024Jan 3, 2024
CaPTk
Public
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
cpp cancer cpp11 cancer-imaging-research medical-image-computing cwl itcr radiomics medical-image-processing nih
C++
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Other
•65•190•163•10•Updated Dec 9, 2023Dec 9, 2023
GBMSurvival_2023
Public
MATLAB
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Other
•1•2•0•0•Updated Nov 20, 2023Nov 20, 2023
DeepMRSeg-Models
Public
1•1•0•0•Updated Sep 8, 2023Sep 8, 2023
RESPOND
Public
Shell
•2•0•1•0•Updated Sep 6, 2023Sep 6, 2023
gandlf_experiments_template
Public template
Python
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Apache License 2.0
•0•0•0•0•Updated May 17, 2023May 17, 2023
Deep-LIBRA
Public
Python
•4•11•6•0•Updated Apr 25, 2023Apr 25, 2023