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    19 repositories

    • bioos-navigen

      Public
      A specialized, pluggable system prompts to enhance general AI agent as Bio-OS expert designed to operate on the Bio-OS platforms.
      WDL
      •
      MIT License
      •2•4•0•17•Updated Jun 17, 2026Jun 17, 2026

    • pybioos

      Public
      Python SDK for Bio-OS.
      Python
      •
      MIT License
      •3•5•0•0•Updated Jun 16, 2026Jun 16, 2026

    • EpiClaw

      Public
      Python
      •
      MIT License
      •1•9•0•0•Updated Apr 13, 2026Apr 13, 2026

    • BioOS-Claws

      Public
      JavaScript
      •0•1•0•0•Updated Mar 27, 2026Mar 27, 2026

    • epidemicClaw

      Public
      MIT License
      •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • bioos-mcp-server

      Public
      The MCP Servers for Bio-OS instance platforms.
      Python
      •
      MIT License
      •7•5•0•1•Updated Mar 11, 2026Mar 11, 2026

    • tes-k8s-agent

      Public
      A component of the Bio-OS TES responsible for receives scheduled tasks from the API server, launches them as Kubernetes Jobs/Pods, monitors execution, and repor…
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 7, 2025Oct 7, 2025

    • tes-api

      Public
      The main service and entry point of the Bio-OS TES ecosystem.
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 7, 2025Oct 7, 2025

    • tes-scheduler

      Public
      A component of the Bio-OS TES responsible for allocates queued tasks to available Kubernetes clusters.
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 7, 2025Oct 7, 2025

    • workspace-rocrate

      Public
      MIT License
      •0•1•0•0•Updated Sep 28, 2025Sep 28, 2025

    • DNBelab

      Public
      WDL
      •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • tes-filer

      Public
      A component of the Bio-OS TES responsible for managing file storage and data access during task execution.
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • Bio-OS-IES-cursorrules

      Public
      The cursorrules document for interaction with Bio-OS IES through LLM AI
      MIT License
      •1•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • workspace_WES

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • workspace_ont_napu

      Public
      Napu (Nanopore Analysis Pipeline) is a collection of WDL workflows for variant calling and de novo assembly of ONT data, optimized for single-flowcell ONT seque…
      WDL
      •
      Other
      •0•1•0•0•Updated Feb 23, 2024Feb 23, 2024

    • workspace_ont_basecalling

      Public
      state-of-the-art “official” ONT basecaller Guppy CPU & GPU version
      WDL
      •0•1•0•0•Updated Feb 23, 2024Feb 23, 2024

    • DataSet-Registry-Service-schema

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jan 15, 2024Jan 15, 2024

    • bioos-workspace-spec

      Public
      Specification for Workspace, the basic data structure in Bio-OS
      MIT License
      •1•1•0•0•Updated Jan 1, 2024Jan 1, 2024

    • bioos-tes

      Public
      Apache License 2.0
      •0•0•0•0•Updated Dec 22, 2023Dec 22, 2023
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