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    19 repositories

    • DiffEnergy

      Public
      Python
      •
      MIT License
      •1•2•0•0•Updated May 19, 2026May 19, 2026

    • FLAb

      Public
      Fitness landscapes for antibodies
      Python
      •
      Other
      •26•170•4•0•Updated May 12, 2026May 12, 2026

    • DL4Proteins-notebooks

      Public
      Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
      deep-learningneural-networksconvolutional-neural-networks
      deep-learningneural-networksconvolutional-neural-networksjupyter-notebookslanguage-modelprotein-designrna-designprotein-structure-predictiongraph-neural-networksdiffusion-models
      Jupyter Notebook
      •
      MIT License
      •118•682•4•1•Updated Apr 17, 2026Apr 17, 2026

    • AF2Dock

      Public
      Python
      •
      MIT License
      •2•14•0•0•Updated Mar 5, 2026Mar 5, 2026

    • dockqc

      Public
      Benchmark of protein-carbohydrate interactions
      Python
      •2•0•0•0•Updated Sep 9, 2025Sep 9, 2025

    • DFMDock

      Public
      DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
      Python
      •
      MIT License
      •8•55•2•2•Updated Jul 22, 2025Jul 22, 2025

    • picap

      Public
      CAPSIF2 and PiCAP
      Jupyter Notebook
      •
      MIT License
      •0•6•0•0•Updated Jun 5, 2025Jun 5, 2025

    • AlphaRED

      Public
      AlphaFold-initiated replica exchange protein docking
      Python
      •
      MIT License
      •18•91•8•3•Updated Jun 5, 2025Jun 5, 2025

    • MaskedProteinEnT

      Public
      Python
      •5•12•0•2•Updated Dec 2, 2024Dec 2, 2024

    • IgLM

      Public
      Generative Language Modeling for Antibody Design
      Python
      •
      Other
      •31•190•6•0•Updated Oct 5, 2024Oct 5, 2024

    • GeoDock

      Public
      Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
      Python
      •
      MIT License
      •17•99•6•0•Updated Jul 29, 2024Jul 29, 2024

    • MPDock

      Public
      This repository contains the dataset of 29 transmembrane protein complexes of different rigidity along with their unbound protein structure. Additionally, there…
      Python
      •
      MIT License
      •0•6•0•0•Updated Jul 5, 2024Jul 5, 2024

    • Implicit-Membrane-Energy-Function-Benchmark

      Public
      This is a set of scientific benchmark tests for evaluating membrane protein modeling energy functions. The test probe an energy function's ability to capture me…
      Scala
      •
      MIT License
      •0•2•0•0•Updated Jan 19, 2024Jan 19, 2024

    • IgFold

      Public
      Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
      Python
      •
      Other
      •71•416•25•1•Updated Sep 3, 2023Sep 3, 2023

    • CAPSIF

      Public
      CArbohydrate-Protein Site IdentiFier
      Jupyter Notebook
      •
      MIT License
      •1•16•0•0•Updated Aug 22, 2023Aug 22, 2023

    • DeepSCAb

      Public
      Python
      •2•4•0•0•Updated Jul 6, 2022Jul 6, 2022

    • deepH3-distances-orientations

      Public
      Python
      •
      Other
      •9•35•5•0•Updated Nov 4, 2021Nov 4, 2021

    • dotfiles

      Public
      A collection of dotfiles for syncing multiple computers
      Python
      •1•0•0•0•Updated Mar 24, 2020Mar 24, 2020

    • graylab_config

      Public
      This repository serves as a storage space for lab-wide resources, such as shell aliases, useful scripts, etc. Please include a descriptive comment for everythi…
      Shell
      •2•2•0•1•Updated Feb 25, 2013Feb 25, 2013
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