Repositories list

• pairedBamToBed12

  Public
  Converts paired-end BAM to BED12 format, based on bedtools

  bed12cagescan

  C++

  •

  GNU General Public License v2.0

  •1•5•5•0•Updated Sep 13, 2024Sep 13, 2024

• Cell-Cycle-on-C1

  Public
  Single-cell transcriptome analysis by fluorescence labeling

  rna-seqsingle-cellfluorescence+ 1cell-cycle

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •5•3•0•0•Updated Jan 10, 2023Jan 10, 2023

• pseudo-random-primers

  Public
  Targeted reduction of highly abundant transcripts with pseudo-random primers

  transcriptomecage

  HTML

  •1•4•0•0•Updated Feb 12, 2020Feb 12, 2020

• C1-CAGE-preview

  Public
  Technology preview of the C1 CAGE protocol: processing and quality control.

  single-cellcagefluidigm

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •5•5•0•0•Updated May 4, 2019May 4, 2019

• scATAC-mouse-human-control

  Public
  Mouse / human control of cross-contaminations in single-cell ATAC-seq on Fluidigm C1

  atac-seqsingle-cell

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •2•8•0•0•Updated Aug 14, 2018Aug 14, 2018

• C1-CAGE-manuscript

  Public
  Code repository for the C1 CAGE manuscript

  HTML

  •0•0•0•0•Updated Jun 11, 2018Jun 11, 2018

• nanoCAGE-2016

  Public
  protocolcage

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Aug 16, 2017Aug 16, 2017