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    115 repositories

    • ggcyto

      Public
      Visualize Cytometry data with ggplot2
      HTML
      •
      MIT License
      •15•59•22•0•Updated Jul 4, 2025Jul 4, 2025

    • flowClust

      Public
      Bayesian flowClust
      R
      •8•10•10•0•Updated May 15, 2025May 15, 2025

    • openCyto

      Public
      A package that provides data analysis pipeline for flow cytometry.
      R
      •
      GNU Affero General Public License v3.0
      •32•79•6•12•Updated Mar 26, 2025Mar 26, 2025

    • CytoML

      Public
      A GatingML Interface for Cross Platform Cytometry Data Sharing
      HTML
      •
      GNU Affero General Public License v3.0
      •15•31•55•0•Updated Mar 7, 2025Mar 7, 2025

    • flowWorkspace

      Public
      flowWorkspace
      R
      •
      GNU Affero General Public License v3.0
      •20•45•49•1•Updated Mar 7, 2025Mar 7, 2025

    • COMPASS

      Public
      Combinatorial Polyfunctionality Analysis of Single Cells
      R
      •11•7•14•0•Updated Feb 11, 2025Feb 11, 2025

    • cytolib

      Public
      c++ library for representing and interacting the gated cytometry data structure
      C++
      •
      GNU Affero General Public License v3.0
      •12•13•9•0•Updated Jan 29, 2025Jan 29, 2025

    • ncdfFlow

      Public
      A package that provides ncdf based storage for flow cytometry data.
      R
      •
      GNU Affero General Public License v3.0
      •7•2•3•0•Updated Jan 13, 2025Jan 13, 2025

    • flowCore

      Public
      Core flow cytometry infrastructure
      R
      •25•50•37•2•Updated Aug 22, 2024Aug 22, 2024

    • MIMOSA2

      Public
      Baseline Adjusted Positivity Calls for Intracellular Cytokine Staining Data
      R
      •2•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • cytoUtils

      Public
      Helper tools for cytometry
      C++
      •1•2•2•0•Updated Dec 19, 2023Dec 19, 2023

    • ImmuneSpaceR

      Public
      An R Interface to the ImmuneSpace database portal
      bioconductorimmunologylabkeyimmunespaceimmporthipc
      R
      •11•24•0•1•Updated Nov 28, 2023Nov 28, 2023

    • MAST

      Public
      Tools and methods for analysis of single cell assay data in R
      R
      •57•249•37•1•Updated Sep 27, 2023Sep 27, 2023

    • FAUST

      Public
      Full annotation using shape-constrained trees
      C++
      •
      GNU General Public License v3.0
      •4•25•4•6•Updated Sep 15, 2023Sep 15, 2023

    • flowStats

      Public
      flowStats: algorithms for flow cytometry data analysis using BioConductor tools
      R
      •10•14•18•1•Updated Jul 19, 2023Jul 19, 2023

    • RProtoBufLib

      Public
      bundled Protocol buffers library as an R package
      R
      •
      Other
      •3•3•6•0•Updated Jul 10, 2023Jul 10, 2023

    • cytoqc

      Public
      A Quality Control tool for cytometry
      R
      •
      Other
      •3•6•5•1•Updated Feb 8, 2023Feb 8, 2023

    • LabKeyModules

      Public
      LabKey Modules for ImmuneSpace
      labkeyimmunespace
      JavaScript
      •
      Artistic License 2.0
      •4•5•0•0•Updated Jan 25, 2023Jan 25, 2023

    • UITesting

      Public
      ImmuneSpace UI Testing
      saucelabsrseleniumimmunespace
      R
      •2•2•0•0•Updated Dec 14, 2022Dec 14, 2022

    • HIPCMatrix

      Public
      Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace
      rna-seqmicroarrayimmunespaceimmporthipc
      R
      •1•1•0•0•Updated Dec 14, 2022Dec 14, 2022

    • ImmuneSpaceCron

      Public
      Tools and functions for generating useful artifacts for ImmuneSpace Reports and APIs
      immunespace
      R
      •1•0•0•0•Updated Dec 14, 2022Dec 14, 2022

    • ImmuneSpaceMaintenance

      Public
      Utility Package for ImmuneSpace Maintenance
      immunespace
      R
      •0•0•0•0•Updated Dec 13, 2022Dec 13, 2022

    • AnalyteExplorer

      Public
      Analyte Explorer Pre-processing Scripts
      immunespacehipc
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 13, 2022Dec 13, 2022

    • ImmuneSignatures

      Public
      HIPC ImmuneSignatures
      immunespaceimmunesignatureshipc
      HTML
      •4•1•2•0•Updated Dec 7, 2022Dec 7, 2022

    • ImmuneSignatures2

      Public
      HIPC ImmuneSignatures2
      immunespaceimmunesignatureshipc
      R
      •1•1•0•0•Updated Dec 5, 2022Dec 5, 2022

    • rcellontologymapping

      Public
      R interface to generate leukocyte cell classifications from cell surface markers using the decision tree from Maecker et al. (2012)
      Haskell
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • ImmPortR

      Public
      R wrapper around the ImmPort API and its download tool
      immport
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Sep 1, 2022Sep 1, 2022

    • flowViz

      Public
      Visualization for flow cytometry
      R
      •0•11•3•0•Updated Aug 17, 2022Aug 17, 2022

    • cytoverse.org

      Public
      HTML
      •0•1•0•0•Updated Mar 18, 2022Mar 18, 2022

    • covid19_sc

      Public
      Processing workflow for COVID-19 single cell data
      covid-19
      R
      •3•17•4•0•Updated Dec 23, 2021Dec 23, 2021