Repositories list

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •11•21•277•11•Updated Feb 4, 2025Feb 4, 2025

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •14•65•268•16•Updated Feb 4, 2025Feb 4, 2025

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •23•92•118•17•Updated Feb 4, 2025Feb 4, 2025

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •25•39•64•8•Updated Feb 4, 2025Feb 4, 2025

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •2•3•6•7•Updated Feb 4, 2025Feb 4, 2025

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •4•5•1•7•Updated Feb 4, 2025Feb 4, 2025

• czid-platformics

  Public
  Python

  •

  MIT License

  •2•4•0•11•Updated Feb 3, 2025Feb 3, 2025

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•7•8•5•Updated Feb 3, 2025Feb 3, 2025

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •3•12•61•3•Updated Feb 3, 2025Feb 3, 2025

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •3•18•13•8•Updated Feb 3, 2025Feb 3, 2025

• blessclient

  Public
  Go client to negotiate SSH certificates

  czisshcertificate+ 3rsyncscpssh-agent

  Go

  •

  MIT License

  •17•64•8•2•Updated Feb 3, 2025Feb 3, 2025

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  terraforminfrastructure-as-codeinfrastructure

  Go

  •

  MIT License

  •20•297•38•5•Updated Feb 3, 2025Feb 3, 2025

• homebrew-tap

  Public
  Ruby

  •2•3•2•0•Updated Feb 3, 2025Feb 3, 2025

• argus-artifacts

  Public
  MIT License

  •0•1•0•0•Updated Feb 3, 2025Feb 3, 2025

• edu-design-system

  Public
  Design system for Education Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•29•1•2•Updated Feb 3, 2025Feb 3, 2025

• camelot

  Public
  Go

  •

  MIT License

  •0•1•0•2•Updated Feb 3, 2025Feb 3, 2025

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •3•7•1•0•Updated Jan 31, 2025Jan 31, 2025

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •25•65•3•3•Updated Jan 31, 2025Jan 31, 2025

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•28•108•4•Updated Jan 31, 2025Jan 31, 2025

• czid-web

  Public
  Infectious Disease Sequencing Platform

  scienceresearchbiology+ 12sequencingcomputational-biologynext-generation-sequencingbioinformatics-pipelineglobal-healthvirologyinfectious-diseases+ 5

  TypeScript

  •

  MIT License

  •24•84•0•2•Updated Jan 30, 2025Jan 30, 2025

• czid-workflows

  Public
  Portable WDL workflows for CZ ID production pipelines

  Python

  •

  MIT License

  •7•42•3•8•Updated Jan 30, 2025Jan 30, 2025

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •5•15•1•1•Updated Jan 28, 2025Jan 28, 2025

• axe-storybook-testing

  Public
  Command line interface for testing Storybook stories for accessibility.

  accessibilityaxetesting

  TypeScript

  •

  MIT License

  •7•53•0•0•Updated Jan 28, 2025Jan 28, 2025

• napari-hub

  Public
  Discover, install, and share napari plugins

  pythontrackingmachine-learning+ 12deep-learninganalysisdetectionpluginsthemesregistrationsegmentation+ 5

  TypeScript

  •

  MIT License

  •18•51•97•10•Updated Jan 28, 2025Jan 28, 2025

• czid-graphql-federation-server

  Public
  GraphQL Mesh server for CZ ID

  TypeScript

  •

  MIT License

  •0•0•0•1•Updated Jan 24, 2025Jan 24, 2025

• open-science

  Public
  curated links and customized materials to support biomedical researchers in implementing open science approaches

  trainingopen-sourcecomputational-biology+ 4open-sciencereproducibilitybiomedical-researchreproducible-computational-methods

  JavaScript

  •

  Other

  •2•8•33•0•Updated Jan 24, 2025Jan 24, 2025

• modified_cellxgene_gateway

  Public
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

  Python

  •

  Apache License 2.0

  •33•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• argo-helm-charts

  Public
  Smarty

  •0•0•0•2•Updated Jan 22, 2025Jan 22, 2025

• platformics

  Public
  Codegen Python GraphQL Entity Framework

  Python

  •

  MIT License

  •0•3•14•2•Updated Jan 16, 2025Jan 16, 2025

• cryoet-data-portal-neuroglancer

  Public
  CryoET Data Portal Neuroglancer configuration helper

  Python

  •

  MIT License

  •2•1•1•6•Updated Jan 15, 2025Jan 15, 2025