Repositories list

• cbc-references-refchef

  Public
  Computational Biology Core List of References for RefChef

  Python

  •

  GNU General Public License v3.0

  •0•0•0•1•Updated Apr 9, 2025Apr 9, 2025

• analysis_template

  Public template
  Template for analysis repositories

  MIT License

  •0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• brodsky_scte

  Public
  Apply the scTE pipeline to process human cartilage data from Ji et al 2017 and try to identify clusters corresponding to transposable elements, specifically Line1 elements.

  Shell

  •

  MIT License

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• refchef-test

  Public
  0•0•0•0•Updated Sep 4, 2024Sep 4, 2024

• refchef

  Public
  YAML-based genomics reference management.

  Python

  •

  GNU General Public License v3.0

  •2•4•9•0•Updated Aug 27, 2024Aug 27, 2024

• dennery_reanalysis_2024

  Public
  MIT License

  •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

• ccv_bootcamp_scrna

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

• ccv_bootcamp_phylogenetics

  Public
  Phylogenetics workshop for CCV Bootcamp 2024

  Shell

  •

  MIT License

  •0•1•0•0•Updated Jun 14, 2024Jun 14, 2024

• ccv_bootcamp_annotations

  Public
  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• workflows_for_repr_research

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• workflows_workshop

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• ccv_bootcamp_R

  Public
  Jupyter Notebook

  •2•1•4•1•Updated Jun 12, 2024Jun 12, 2024

• ccv_bootcamp_RNAseq

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

• ccv_bootcamp_Reproducibility_R

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

• workflows_on_OSCAR

  Public
  Python

  •0•0•5•0•Updated Jun 10, 2024Jun 10, 2024

• dscov_singlecell_2024

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated May 16, 2024May 16, 2024

• workflow_prototypes_on_OSCAR

  Public
  Nextflow

  •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• covid19_analysis

  Public
  R

  •

  MIT License

  •0•0•5•0•Updated Jan 8, 2024Jan 8, 2024

• DSCOV_actions

  Public
  This repository is for the DSCoV presentation on GitHub Actions

  MIT License

  •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

• compbiocore.github.io

  Public
  CSS

  •

  MIT License

  •0•1•0•5•Updated Oct 19, 2023Oct 19, 2023

• Fedulov_porcine_rrbs

  Public
  Shell

  •0•0•0•0•Updated Oct 5, 2023Oct 5, 2023

• VariantVisualization.jl

  Public
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

  Julia

  •

  Other

  •13•86•36•1•Updated Aug 7, 2023Aug 7, 2023

• scrna_r_workshop

  Public
  R

  •0•0•2•0•Updated Jun 9, 2023Jun 9, 2023

• ccv_bootcamp_bioinfo

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 6, 2023Jun 6, 2023

• DEseq_workshop_2_2021

  Public
  Jupyter Notebook

  •0•1•0•0•Updated May 23, 2023May 23, 2023

• shallowvariant

  Public
  ShallowVariant is an attempt to build a child model for the variant caller DeepVariant (for CSCI1470)

  Python

  •0•0•0•4•Updated Mar 25, 2023Mar 25, 2023

• NMR-WebApp-inputs

  Public
  Shell

  •0•0•0•0•Updated Mar 21, 2023Mar 21, 2023

• NMR-WebApp

  Public
  Python

  •0•0•6•0•Updated Mar 21, 2023Mar 21, 2023

• refchef-ember

  Public
  Revamped Refchef View Application. Built with Ember and GitHub API. (for Hugo version, check refchef-view repo)

  JavaScript

  •0•0•0•11•Updated Mar 4, 2023Mar 4, 2023

• poweranalyses

  Public
  A collection of power analyses done for different sequencing experiments

  HTML

  •0•1•0•0•Updated Mar 3, 2023Mar 3, 2023