Repositories list

• scilus_website

  Public
  SCIL website

  HTML

  •

  MIT License

  •6•0•0•0•Updated Feb 13, 2026Feb 13, 2026

• sf-tractomics

  Public
  Diffusion MRI Pipeline for human brain

  Nextflow

  •

  MIT License

  •7•6•8•1•Updated Feb 13, 2026Feb 13, 2026

• scilpy

  Public
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

  Python

  •

  Other

  •75•94•37•16•Updated Feb 11, 2026Feb 11, 2026

• sf-pediatric

  Public
  sf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

  pipelinediffusion-mripediatrics

  Nextflow

  •

  MIT License

  •1•7•3•1•Updated Feb 11, 2026Feb 11, 2026

• sf-pediatric-documentation

  Public
  MDX

  •1•0•1•1•Updated Feb 10, 2026Feb 10, 2026

• trigeminal

  Public
  Shell

  •3•0•0•2•Updated Feb 9, 2026Feb 9, 2026

• tractometry_flow

  Public
  Nextflow

  •13•1•0•1•Updated Feb 5, 2026Feb 5, 2026

• nf-mouse

  Public
  Diffusion MRI Pipeline for Mouse

  mousedwibrain+ 3nf-corenextflow-pipelinenf-neuro

  Nextflow

  •

  MIT License

  •1•1•1•3•Updated Jan 28, 2026Jan 28, 2026

• scil-documentation

  Public
  Documentation for the SCIL

  Python

  •20•4•12•6•Updated Jan 23, 2026Jan 23, 2026

• sf-tractomics-documentation

  Public
  sf-tractomics documentation

  pipelinenextflowmri+ 2diffusionnf-neuro

  MDX

  •2•0•0•0•Updated Jan 13, 2026Jan 13, 2026

• neurogister

  Public
  Python

  •1•2•0•1•Updated Dec 13, 2025Dec 13, 2025

• containers-scilus

  Public
  Files needed to build a container to run all scilus flows.

  Dockerfile

  •5•4•5•1•Updated Dec 10, 2025Dec 10, 2025

• nf-mouse-documentation

  Public
  MDX

  •1•0•0•0•Updated Nov 26, 2025Nov 26, 2025

• register_flow

  Public
  Nextflow

  •2•1•1•0•Updated Nov 18, 2025Nov 18, 2025

• teaching_imn359

  Public
  Python

  •2•0•0•0•Updated Nov 17, 2025Nov 17, 2025

• tractoflow_documentation

  Public
  Documentation related files for tractoflow

  Python

  •6•0•2•0•Updated Nov 5, 2025Nov 5, 2025

• scilpy-bot

  Public
  Exploration of contextual approach for LLM and scilpy scripts

  Python

  •3•0•0•0•Updated Oct 10, 2025Oct 10, 2025

• extractor_flow

  Public
  Nextflow

  •2•4•0•1•Updated Aug 29, 2025Aug 29, 2025

• quactography

  Public
  Python

  •

  Apache License 2.0

  •7•1•4•3•Updated Aug 13, 2025Aug 13, 2025

• beyond_fa_challenge

  Public
  SCIL team project for the beyond_fa_challenge

  Nextflow

  •6•0•0•3•Updated Jun 27, 2025Jun 27, 2025

• combine_flows

  Public
  Shell

  •6•0•1•1•Updated Jun 26, 2025Jun 26, 2025

• noddi_flow

  Public
  Nextflow

  •

  MIT License

  •3•0•0•0•Updated Jun 26, 2025Jun 26, 2025

• rbx_flow

  Public
  Nextflow

  •

  MIT License

  •11•6•2•1•Updated Jun 24, 2025Jun 24, 2025

• connectoflow

  Public
  Nextflow

  •

  MIT License

  •5•3•2•0•Updated Jun 12, 2025Jun 12, 2025

• freesurfer_flow

  Public
  Shell

  •

  MIT License

  •4•1•2•0•Updated May 7, 2025May 7, 2025

• freewater_flow

  Public
  Nextflow

  •

  MIT License

  •5•7•1•0•Updated May 7, 2025May 7, 2025

• dmri-explorer

  Public
  A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.

  visualizationopenglcpp+ 1diffusion-mri

  C++

  •

  MIT License

  •7•10•9•1•Updated Apr 23, 2025Apr 23, 2025

• mrds_flow

  Public
  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

• disconets_flow

  Public
  Nextflow

  •2•0•1•0•Updated Dec 19, 2024Dec 19, 2024

• Infant-DWI

  Public
  Complete pipeline to perform tractography from infant diffusion MRI data.

  Nextflow

  •

  MIT License

  •2•0•0•0•Updated Nov 17, 2024Nov 17, 2024