Repositories list

• scHPF

  Public
  Single-cell Hierarchical Poisson Factorization

  dimensionality-reductionscrna-seqvariational-bayes

  dimensionality-reductionscrna-seqvariational-bayes

  Python

  •

  BSD 2-Clause "Simplified" License

  •11•75•9•1•Updated Feb 14, 2026Feb 14, 2026

• MMoCHi

  Public
  MultiModal Classifier Hierarchy (MMoCHi)

  Python

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Nov 9, 2024Nov 9, 2024

• consensus_scHPF_wrapper

  Public
  Python

  •2•5•0•1•Updated Jul 11, 2024Jul 11, 2024

• dna10x

  Public
  Pipeline for processing scDNA-seq data obtained using the 10x Genomics scATAC-seq kit.

  Python

  •1•1•2•0•Updated Feb 25, 2023Feb 25, 2023

• pbmc_citeseq

  Public
  0•0•0•0•Updated Jan 3, 2023Jan 3, 2023

• SCOPEseq2

  Public
  Python

  •0•0•0•0•Updated Dec 17, 2022Dec 17, 2022

• DropSeqPipeline8

  Public
  Python

  •1•3•0•0•Updated Apr 11, 2022Apr 11, 2022

• riboPLATE-seq

  Public
  Notebook and associated scripts for interpretation of riboPLATE-seq data

  Jupyter Notebook

  •1•1•0•0•Updated Nov 15, 2021Nov 15, 2021

• Neurite_FISH_Quant

  Public
  Python code for quantification of FISH puncta in neurites

  Jupyter Notebook

  •1•2•0•0•Updated Oct 14, 2021Oct 14, 2021

• cluster_diffex2018

  Public
  scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers

  Python

  •

  MIT License

  •8•22•0•0•Updated Sep 28, 2021Sep 28, 2021

• demux10x

  Public
  Python

  •0•0•0•0•Updated Aug 4, 2021Aug 4, 2021

• proteomics2021

  Public
  Python

  •0•1•0•0•Updated Jun 2, 2021Jun 2, 2021

• PhenoGraph

  Public
  Subpopulation detection in high-dimensional single-cell data

  Python

  •

  MIT License

  •74•0•0•0•Updated Nov 13, 2020Nov 13, 2020

• umap_projection

  Public
  Python

  •4•4•0•0•Updated Mar 7, 2020Mar 7, 2020