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  1. PyDESeq2 PyDESeq2 Public

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    Python 643 74

  2. FLamby FLamby Public

    Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

    Python 213 25

  3. HistoSSLscaling HistoSSLscaling Public

    Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

    Jupyter Notebook 151 12

  4. HE2RNA_code HE2RNA_code Public archive

    Train a model to predict gene expression from histology slides.

    Python 99 38

  5. GrAIdient GrAIdient Public

    GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

    Swift 82 2

  6. DSB2017 DSB2017 Public archive

    Data Science Bowl 2017 : Lung Cancer Detection

    Python 46 16

Repositories

Showing 10 of 53 repositories
  • docker-dependency-updater Public

    Checks system dependencies and update them if required

    owkin/docker-dependency-updater’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 2 Updated Apr 22, 2025
  • PyDESeq2 Public

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    owkin/PyDESeq2’s past year of commit activity
    Python 643 MIT 74 36 7 Updated Apr 21, 2025
  • deepdeconv-fork Public Forked from owkin/deepdeconv

    Deep probabilistic analysis of single-cell omics data

    owkin/deepdeconv-fork’s past year of commit activity
    Python 2 BSD-3-Clause 393 0 2 Updated Apr 18, 2025
  • fedpydeseq2 Public

    A federated implementation of PyDESeq2, based on Substra.

    owkin/fedpydeseq2’s past year of commit activity
    Python 10 MIT 0 0 1 Updated Apr 16, 2025
  • owkin/fedpydeseq2-paper-experiments’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Apr 15, 2025
  • plism-benchmark Public

    Official repository for PLISM robustness benchmark of histology foundation models

    owkin/plism-benchmark’s past year of commit activity
    Python 1 0 0 0 Updated Apr 8, 2025
  • Patho-Bench Public Forked from mahmoodlab/Patho-Bench

    Standardized benchmark for computational pathology foundation models.

    owkin/Patho-Bench’s past year of commit activity
    Python 0 10 0 0 Updated Apr 3, 2025
  • legitimate-uq-metrics Public

    This repository contains the code implementation to reproduce the experiments presented in our paper on uncertainty quantification metrics for classification tasks.

    owkin/legitimate-uq-metrics’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 4, 2025
  • Open-Reasoner-Zero Public Forked from Open-Reasoner-Zero/Open-Reasoner-Zero

    Official Repo for Open-Reasoner-Zero

    owkin/Open-Reasoner-Zero’s past year of commit activity
    Python 0 MIT 97 0 0 Updated Mar 3, 2025
  • sparsesurv Public Forked from BoevaLab/sparsesurv
    owkin/sparsesurv’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Feb 18, 2025

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