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updated options to match latest PICRUSt2 version
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q2_picrust2/_full_pipeline.py

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -50,17 +50,18 @@ def full_pipeline(table: biom.Table,
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no_pathways=False,
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regroup_map=default_regroup_map,
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no_regroup=False,
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metagenome_contrib=False,
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stratified=False,
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max_nsti=max_nsti,
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min_reads=1,
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min_samples=1,
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hsp_method=hsp_method,
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skip_nsti=False,
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no_gap_fill=False,
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skip_minpath=False,
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no_gap_fill=False,
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coverage=False,
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per_sequence_contrib=False,
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wide_table=False,
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skip_norm=False,
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remove_intermediate=False,
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verbose=True)
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