Automatically add the FYPO namespace to the OWL file

[kimrutherford]

Try Jim Balhoff's suggestion from email:

---

14 Mar 2025, 07:33 Re: [go-ontology] automatic namespace additions

Hi Val,

I think it should be easy, if you are able to run ROBOT in your pipeline. Here you can see I added a 'robot query --update’ step: https://github.com/geneontology/go-ontology/pull/29894/files#diff-1376bbad1ef43bed6c9aed84b7d52471e63c87277b2b3f72ed0a5bdef481b638R204

It uses this SPARQL update: https://github.com/geneontology/go-ontology/pull/29894/files#diff-c94c78b5f711d0fd41011be8b9b0187c39415fd03f8e812f7a13c6915218ee6d

I think yours can be simpler, like:

PREFIX rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
PREFIX rdfs: http://www.w3.org/2000/01/rdf-schema#
PREFIX owl: http://www.w3.org/2002/07/owl#
prefix xsd: http://www.w3.org/2001/XMLSchema#
PREFIX oio: http://www.geneontology.org/formats/oboInOwl#
PREFIX GO: http://purl.obolibrary.org/obo/GO_

INSERT {
?term oio:hasOBONamespace "fission_yeast_phenotype" .
}
WHERE {
?term a owl:Class .
FILTER(isIRI(?term))
FILTER(STRSTARTS(STR(?term), "http://purl.obolibrary.org/obo/FYPO_"))
}