Switch to tools4rdf

[srmnitc]

This pull request includes significant updates to the atomrdf package, focusing on refactoring imports, updating dependencies, and removing deprecated code. The most important changes are summarized below:

Refactoring Imports:

• atomrdf/graph.py: Updated import statements to remove atomrdf.network.network and atomrdf.network.ontology, replacing them with atomrdf.ontology.
• atomrdf/namespace.py: Changed import from atomrdf.network.network to tools4rdf.network.network.

Code Removal:

• atomrdf/network/ontology.py: Entire file removed, including the read_ontology function and associated documentation.
• atomrdf/network/parser.py: Entire file removed, including the OntoParser class and its methods.
• atomrdf/network/patch.py: Entire file removed, which contained specific patches for atomrdf.
• tests/test_term.py: Entire test file removed, which included various test functions for ontology terms.

Dependency Updates:

• environment-docs.yml and environment.yml: Added tools4rdf >=0.2.0 to dependencies. [1] [2]

Function Modifications:

• atomrdf/ontology.py: Added a new read_ontology function that utilizes tools4rdf for parsing ontologies.
• atomrdf/workflow/workflow.py: Modified _select_base_property method to set the datatype of Literal to XSD.float.

These changes aim to streamline the codebase by removing outdated components and improving the overall structure and dependencies.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 59.92%. Comparing base (b561599) to head (788bfce).
Report is 9 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #182      +/-   ##
==========================================
- Coverage   64.70%   59.92%   -4.79%     
==========================================
  Files          25       21       -4     
  Lines        3907     3266     -641     
==========================================
- Hits         2528     1957     -571     
+ Misses       1379     1309      -70     

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