Remote IO: S3 support

conda/environments/all_cuda-118_arch-aarch64.yaml

@@ -6,6 +6,7 @@ channels:
 - conda-forge
 - nvidia
 dependencies:
+- boto3>=1.21.21
 - c-compiler
 - cmake>=3.26.4,!=3.30.0
 - cuda-python>=11.7.1,<12.0a0
@@ -18,6 +19,7 @@ dependencies:
 - doxygen=1.9.1
 - gcc_linux-aarch64=11.*
 - libcurl>=7.87.0
+- moto>=4.0.8
 - ninja
 - numcodecs !=0.12.0
 - numpy>=1.23,<3.0a0

conda/environments/all_cuda-118_arch-x86_64.yaml

@@ -6,6 +6,7 @@ channels:
 - conda-forge
 - nvidia
 dependencies:
+- boto3>=1.21.21
 - c-compiler
 - cmake>=3.26.4,!=3.30.0
 - cuda-python>=11.7.1,<12.0a0
@@ -20,6 +21,7 @@ dependencies:
 - libcufile-dev=1.4.0.31
 - libcufile=1.4.0.31
 - libcurl>=7.87.0
+- moto>=4.0.8
 - ninja
 - numcodecs !=0.12.0
 - numpy>=1.23,<3.0a0

conda/environments/all_cuda-125_arch-aarch64.yaml

@@ -6,6 +6,7 @@ channels:
 - conda-forge
 - nvidia
 dependencies:
+- boto3>=1.21.21
 - c-compiler
 - cmake>=3.26.4,!=3.30.0
 - cuda-nvcc
@@ -19,6 +20,7 @@ dependencies:
 - gcc_linux-aarch64=11.*
 - libcufile-dev
 - libcurl>=7.87.0
+- moto>=4.0.8
 - ninja
 - numcodecs !=0.12.0
 - numpy>=1.23,<3.0a0

conda/environments/all_cuda-125_arch-x86_64.yaml

@@ -6,6 +6,7 @@ channels:
 - conda-forge
 - nvidia
 dependencies:
+- boto3>=1.21.21
 - c-compiler
 - cmake>=3.26.4,!=3.30.0
 - cuda-nvcc
@@ -19,6 +20,7 @@ dependencies:
 - gcc_linux-64=11.*
 - libcufile-dev
 - libcurl>=7.87.0
+- moto>=4.0.8
 - ninja
 - numcodecs !=0.12.0
 - numpy>=1.23,<3.0a0

cpp/include/kvikio/remote_handle.hpp

@@ -18,6 +18,8 @@
 #include <cstddef>
 #include <cstring>
 #include <memory>
+#include <optional>
+#include <regex>
 #include <sstream>
 #include <stdexcept>
 #include <string>
@@ -89,7 +91,7 @@ inline std::size_t callback_device_memory(char* data,
                                           void* context)
 {
   auto ctx                 = reinterpret_cast<CallbackContext*>(context);
-  const std::size_t nbytes = size * nmemb;
+  std::size_t const nbytes = size * nmemb;
   if (ctx->size < ctx->offset + nbytes) {
     ctx->overflow_error = true;
     return CURL_WRITEFUNC_ERROR;
@@ -145,12 +147,189 @@ class HttpEndpoint : public RemoteEndpoint {
   std::string _url;
 
  public:
+  /**
+   * @brief Create a http endpoint from a url.
+   *
+   * @param url The full http url to the remote file.
+   */
   HttpEndpoint(std::string url) : _url{std::move(url)} {}
   void setopt(CurlHandle& curl) override { curl.setopt(CURLOPT_URL, _url.c_str()); }
   std::string str() override { return _url; }
   ~HttpEndpoint() override = default;
 };
 
+/**
+ * @brief A remote endpoint using AWS's S3 protocol.
+ */
+class S3Endpoint : public RemoteEndpoint {
+ private:
+  std::string _url;
+  std::string _aws_sigv4;
+  std::string _aws_userpwd;
+
+  /**
+   * @brief Parse a AWS argument such as `aws_region` or `aws_access_key`.
+   *
+   * If not nullopt, the optional's value is returned otherwise the environment
+   * variable `env_var` is used. If that also doesn't have a value:
+   *   - if `err_msg` is empty, the empty string is returned.
+   *   - if `err_msg` is not empty, `std::invalid_argument(`err_msg`)` is thrown.
+   *
+   * @param aws_arg The AWS argument to parse.
+   * @param env_var The name of the environment variable to check if `aws_arg` isn't set.
+   * @param err_msg The error message to throw on error or the empty string.
+   * @return The parsed AWS argument or the empty string.
+   */
+  static std::string parse_aws_argument(std::optional<std::string> aws_arg,
+                                        std::string const& env_var,
+                                        std::string const& err_msg = "")
+  {
+    if (aws_arg.has_value()) { return std::move(*aws_arg); }
+
+    char const* env = std::getenv(env_var.c_str());
+    if (env == nullptr) {
+      if (err_msg.empty()) { return std::string(); }
+      throw std::invalid_argument(err_msg);
+    }
+    return std::string(env);
+  }
+
+  /**
+   * @brief Get url from a AWS S3 bucket and object name.
+   *
+   * @param bucket_name The name of the S3 bucket.
+   * @param object_name The name of the S3 object.
+   * @param aws_region The AWS region, such as "us-east-1", to use. If nullopt, the value of the
+   * `AWS_DEFAULT_REGION` environment variable is used.
+   * @param aws_endpoint_url Overwrite the endpoint url to use. If nullopt, the value of
+   * the `AWS_ENDPOINT_URL` environment variable is used. If this is also not set, the regular
+   * AWS url scheme is used: "https://<bucket>.s3.<region>.amazonaws.com/<object>"
+   */
+  static std::string url_from_bucket_and_object(std::string const& bucket_name,
+                                                std::string const& object_name,
+                                                std::optional<std::string> const& aws_region,
+                                                std::optional<std::string> aws_endpoint_url)
+  {
+    auto const endpoint_url = parse_aws_argument(std::move(aws_endpoint_url), "AWS_ENDPOINT_URL");
+    std::stringstream ss;
+    if (endpoint_url.empty()) {
+      auto const region =
+        parse_aws_argument(std::move(aws_region),
+                           "AWS_DEFAULT_REGION",
+                           "S3: must provide `aws_region` if AWS_DEFAULT_REGION isn't set.");
+      // We default to the official AWS url scheme.
+      ss << "https://" << bucket_name << ".s3." << region << ".amazonaws.com/" << object_name;
+    } else {
+      ss << endpoint_url << "/" << bucket_name << "/" << object_name;
+    }
+    return ss.str();
+  }
+
+ public:
+  /**
+   * @brief Given an url like "s3://<bucket>/<object>", return the name of the bucket and object.
+   *
+   * @throws std::invalid_argument if url is ill-formed or is missing the bucket or object name.
+   *
+   * @param s3_url S3 url.
+   * @return Pair of strings: [bucket-name, object-name].
+   */
+  [[nodiscard]] static std::pair<std::string, std::string> parse_s3_url(std::string const& s3_url)
+  {
+    // Regular expression to match s3://<bucket>/<object>
+    std::regex pattern{R"(s3://([^/]+)/(.+))"};
+    std::smatch matches;
+    if (std::regex_match(s3_url, matches, pattern)) { return {matches[1].str(), matches[2].str()}; }
+    throw std::invalid_argument("Input string does not match the expected S3 URL format.");
+  }
+
+  /**
+   * @brief Create a S3 endpoint from a url.
+   *
+   * @param url The full http url to the S3 file. NB: this should be an url starting with
+   * "http://" or "https://". If you have an S3 url of the form "s3://<bucket>/<object>",
+   * please use `S3Endpoint::parse_s3_url()` to convert it.
+   * @param aws_region The AWS region, such as "us-east-1", to use. If nullopt, the value of the
+   * `AWS_DEFAULT_REGION` environment variable is used.
+   * @param aws_access_key The AWS access key to use. If nullopt, the value of the
+   * `AWS_ACCESS_KEY_ID` environment variable is used.
+   * @param aws_secret_access_key The AWS secret access key to use. If nullopt, the value of the
+   * `AWS_SECRET_ACCESS_KEY` environment variable is used.
+   */
+  S3Endpoint(std::string url,
+             std::optional<std::string> aws_region            = std::nullopt,
+             std::optional<std::string> aws_access_key        = std::nullopt,
+             std::optional<std::string> aws_secret_access_key = std::nullopt)
+    : _url{std::move(url)}
+  {
+    auto const region =
+      parse_aws_argument(std::move(aws_region),
+                         "AWS_DEFAULT_REGION",
+                         "S3: must provide `aws_region` if AWS_DEFAULT_REGION isn't set.");
+
+    auto const access_key =
+      parse_aws_argument(std::move(aws_access_key),
+                         "AWS_ACCESS_KEY_ID",
+                         "S3: must provide `aws_access_key` if AWS_ACCESS_KEY_ID isn't set.");
+
+    auto const secret_access_key = parse_aws_argument(
+      std::move(aws_secret_access_key),
+      "AWS_SECRET_ACCESS_KEY",
+      "S3: must provide `aws_secret_access_key` if AWS_SECRET_ACCESS_KEY isn't set.");
+
+    // Create the CURLOPT_AWS_SIGV4 option
+    {
+      std::stringstream ss;
+      ss << "aws:amz:" << region << ":s3";
+      _aws_sigv4 = ss.str();
+    }
+    // Create the CURLOPT_USERPWD option
+    {
+      std::stringstream ss;
+      ss << access_key << ":" << secret_access_key;
+      _aws_userpwd = ss.str();
+    }
+  }
+
+  /**
+   * @brief Create a S3 endpoint from a bucket and object name.
+   *
+   * @param bucket_name The name of the S3 bucket.
+   * @param object_name The name of the S3 object.
+   * @param aws_region The AWS region, such as "us-east-1", to use. If nullopt, the value of the
+   * `AWS_DEFAULT_REGION` environment variable is used.
+   * @param aws_access_key The AWS access key to use. If nullopt, the value of the
+   * `AWS_ACCESS_KEY_ID` environment variable is used.
+   * @param aws_secret_access_key The AWS secret access key to use. If nullopt, the value of the
+   * `AWS_SECRET_ACCESS_KEY` environment variable is used.
+   * @param aws_endpoint_url Overwrite the endpoint url to use. If nullopt, the value of
+   * the `AWS_ENDPOINT_URL` environment variable is used. If this is also not set, the regular
+   * AWS url scheme is used: "https://<bucket>.s3.<region>.amazonaws.com/<object>"
+   */
+  S3Endpoint(std::string const& bucket_name,
+             std::string const& object_name,
+             std::optional<std::string> aws_region            = std::nullopt,
+             std::optional<std::string> aws_access_key        = std::nullopt,
+             std::optional<std::string> aws_secret_access_key = std::nullopt,
+             std::optional<std::string> aws_endpoint_url      = std::nullopt)
+    : S3Endpoint(url_from_bucket_and_object(
+                   bucket_name, object_name, aws_region, std::move(aws_endpoint_url)),
+                 std::move(aws_region),
+                 std::move(aws_access_key),
+                 std::move(aws_secret_access_key))
+  {
+  }
+
+  void setopt(CurlHandle& curl) override
+  {
+    curl.setopt(CURLOPT_URL, _url.c_str());
+    curl.setopt(CURLOPT_AWS_SIGV4, _aws_sigv4.c_str());
+    curl.setopt(CURLOPT_USERPWD, _aws_userpwd.c_str());
+  }
+  std::string str() override { return _url; }
+  ~S3Endpoint() override = default;
+};
+
 /**
  * @brief Handle of remote file.
  */
@@ -229,7 +408,7 @@ class RemoteHandle {
          << " bytes file (" << _endpoint->str() << ")";
       throw std::invalid_argument(ss.str());
     }
-    const bool is_host_mem = is_host_memory(buf);
+    bool const is_host_mem = is_host_memory(buf);
     auto curl              = create_curl_handle();
     _endpoint->setopt(curl);
 

dependencies.yaml

@@ -345,6 +345,13 @@ dependencies:
           - pytest
           - pytest-cov
           - rangehttpserver
+          - boto3>=1.21.21
+      - output_types: [requirements, pyproject]
+        packages:
+          - moto[server]>=4.0.8
+      - output_types: conda
+        packages:
+          - moto>=4.0.8
     specific:
       - output_types: [conda, requirements, pyproject]
         matrices:

python/kvikio/kvikio/_lib/remote_handle.pyx

@@ -23,6 +23,15 @@ cdef extern from "<kvikio/remote_handle.hpp>" nogil:
     cdef cppclass cpp_HttpEndpoint "kvikio::HttpEndpoint":
         cpp_HttpEndpoint(string url) except +
 
+    cdef cppclass cpp_S3Endpoint "kvikio::S3Endpoint":
+        cpp_S3Endpoint(string url) except +
+
+    cdef cppclass cpp_S3Endpoint "kvikio::S3Endpoint":
+        cpp_S3Endpoint(string bucket_name, string object_name) except +
+
+    pair[string, string] cpp_parse_s3_url \
+        "kvikio::S3Endpoint::parse_s3_url"(string url) except +
+
     cdef cppclass cpp_RemoteHandle "kvikio::RemoteHandle":
         cpp_RemoteHandle(
             unique_ptr[cpp_RemoteEndpoint] endpoint, size_t nbytes
@@ -67,6 +76,59 @@ cdef class RemoteFile:
         ret._handle = make_unique[cpp_RemoteHandle](move(ep), n)
         return ret
 
+    @classmethod
+    def open_s3(
+        cls,
+        bucket_name: str,
+        object_name: str,
+        nbytes: Optional[int],
+    ):
+        cdef RemoteFile ret = RemoteFile()
+        cdef unique_ptr[cpp_S3Endpoint] ep = make_unique[cpp_S3Endpoint](
+            _to_string(bucket_name), _to_string(object_name)
+        )
+        if nbytes is None:
+            ret._handle = make_unique[cpp_RemoteHandle](move(ep))
+            return ret
+        cdef size_t n = nbytes
+        ret._handle = make_unique[cpp_RemoteHandle](move(ep), n)
+        return ret
+
+    @classmethod
+    def open_s3_from_http_url(
+        cls,
+        url: str,
+        nbytes: Optional[int],
+    ):
+        cdef RemoteFile ret = RemoteFile()
+        cdef unique_ptr[cpp_S3Endpoint] ep = make_unique[cpp_S3Endpoint](
+            _to_string(url)
+        )
+        if nbytes is None:
+            ret._handle = make_unique[cpp_RemoteHandle](move(ep))
+            return ret
+        cdef size_t n = nbytes
+        ret._handle = make_unique[cpp_RemoteHandle](move(ep), n)
+        return ret
+
+    @classmethod
+    def open_s3_from_s3_url(
+        cls,
+        url: str,
+        nbytes: Optional[int],
+    ):
+        cdef pair[string, string] bucket_and_object = cpp_parse_s3_url(_to_string(url))
+        cdef RemoteFile ret = RemoteFile()
+        cdef unique_ptr[cpp_S3Endpoint] ep = make_unique[cpp_S3Endpoint](
+            bucket_and_object.first, bucket_and_object.second
+        )
+        if nbytes is None:
+            ret._handle = make_unique[cpp_RemoteHandle](move(ep))
+            return ret
+        cdef size_t n = nbytes
+        ret._handle = make_unique[cpp_RemoteHandle](move(ep), n)
+        return ret
+
     def nbytes(self) -> int:
         return deref(self._handle).nbytes()