fixed batching and gene processing

rsinghlab · Nov 5, 2024 · 036cc3a · 036cc3a
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commit 036cc3a
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diff --git a/Analysis.ipynb b/Analysis.ipynb
@@ -510,7 +510,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.16"
+   "version": "3.9.17"
   },
   "orig_nbformat": 4
  },

diff --git a/Analysis/batch_corrected/.DS_Store b/Analysis/batch_corrected/.DS_Store
diff --git a/Analysis/batch_corrected/body/CNN/age/full_data/celltype_all/sextype_all/Analysis/Stats.JSON b/Analysis/batch_corrected/body/CNN/age/full_data/celltype_all/sextype_all/Analysis/Stats.JSON
diff --git a/...d/body/CNN/age/full_data/celltype_all/sextype_all/Analysis/confusion_matrix.png b/...d/body/CNN/age/full_data/celltype_all/sextype_all/Analysis/confusion_matrix.png
diff --git a/...orrected/body/CNN/age/full_data/celltype_all/sextype_all/Analysis/roc_curve.png b/...orrected/body/CNN/age/full_data/celltype_all/sextype_all/Analysis/roc_curve.png
diff --git a/...d/body/CNN/age/full_data/celltype_all/sextype_all/Analysis/training_metrics.png b/...d/body/CNN/age/full_data/celltype_all/sextype_all/Analysis/training_metrics.png
diff --git a/...corrected/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_30.png b/...corrected/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_30.png
diff --git a/..._corrected/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_5.png b/..._corrected/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_5.png
diff --git a/...corrected/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_50.png b/...corrected/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_50.png
diff --git a/...corrected/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_70.png b/...corrected/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_70.png
diff --git a/...cted/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_Overall.png b/...cted/head/CNN/age/full_data/celltype_all/Analysis/SHAP/SHAP_Summary_Overall.png
diff --git a/Analysis/batch_corrected/head/CNN/age/full_data/celltype_all/Analysis/Stats.JSON b/Analysis/batch_corrected/head/CNN/age/full_data/celltype_all/Analysis/Stats.JSON
diff --git a/...tch_corrected/head/CNN/age/full_data/celltype_all/Analysis/confusion_matrix.png b/...tch_corrected/head/CNN/age/full_data/celltype_all/Analysis/confusion_matrix.png
diff --git a/...ysis/batch_corrected/head/CNN/age/full_data/celltype_all/Analysis/roc_curve.png b/...ysis/batch_corrected/head/CNN/age/full_data/celltype_all/Analysis/roc_curve.png
diff --git a/...tch_corrected/head/CNN/age/full_data/celltype_all/Analysis/training_metrics.png b/...tch_corrected/head/CNN/age/full_data/celltype_all/Analysis/training_metrics.png
diff --git a/Analysis/uncorrected/.DS_Store b/Analysis/uncorrected/.DS_Store
diff --git a/Analysis/uncorrected/all/CNN/age/full_data/celltype_all/sextype_all/Results/Stats.JSON b/Analysis/uncorrected/all/CNN/age/full_data/celltype_all/sextype_all/Results/Stats.JSON
diff --git a/...ted/all/CNN/age/full_data/celltype_all/sextype_all/Results/confusion_matrix.png b/...ted/all/CNN/age/full_data/celltype_all/sextype_all/Results/confusion_matrix.png