Merge branch 'master' of https://github.com/samuel-carleial/samuel-ca…

…rleial.github.io

Gemfile.lock

@@ -14,9 +14,8 @@ GEM
       execjs
     coffee-script-source (1.11.1)
     colorator (1.1.0)
-    commonmarker (0.17.13)
-      ruby-enum (~> 0.5)
-    concurrent-ruby (1.2.3)
+    commonmarker (0.23.10)
+    concurrent-ruby (1.3.4)
     dnsruby (1.71.0)
       simpleidn (~> 0.2.1)
     em-websocket (0.5.3)
@@ -33,12 +32,12 @@ GEM
     ffi (1.16.3)
     forwardable-extended (2.6.0)
     gemoji (3.0.1)
-    github-pages (223)
+    github-pages (225)
       github-pages-health-check (= 1.17.9)
       jekyll (= 3.9.0)
       jekyll-avatar (= 0.7.0)
       jekyll-coffeescript (= 1.1.1)
-      jekyll-commonmark-ghpages (= 0.1.6)
+      jekyll-commonmark-ghpages (= 0.2.0)
       jekyll-default-layout (= 0.1.4)
       jekyll-feed (= 0.15.1)
       jekyll-gist (= 1.5.0)
@@ -52,7 +51,7 @@ GEM
       jekyll-relative-links (= 0.6.1)
       jekyll-remote-theme (= 0.4.3)
       jekyll-sass-converter (= 1.5.2)
-      jekyll-seo-tag (= 2.7.1)
+      jekyll-seo-tag (= 2.8.0)
       jekyll-sitemap (= 1.4.0)
       jekyll-swiss (= 1.0.0)
       jekyll-theme-architect (= 0.2.0)
@@ -108,12 +107,12 @@ GEM
     jekyll-coffeescript (1.1.1)
       coffee-script (~> 2.2)
       coffee-script-source (~> 1.11.1)
-    jekyll-commonmark (1.3.1)
-      commonmarker (~> 0.14)
-      jekyll (>= 3.7, < 5.0)
-    jekyll-commonmark-ghpages (0.1.6)
-      commonmarker (~> 0.17.6)
-      jekyll-commonmark (~> 1.2)
+    jekyll-commonmark (1.4.0)
+      commonmarker (~> 0.22)
+    jekyll-commonmark-ghpages (0.2.0)
+      commonmarker (~> 0.23.4)
+      jekyll (~> 3.9.0)
+      jekyll-commonmark (~> 1.4.0)
       rouge (>= 2.0, < 4.0)
     jekyll-default-layout (0.1.4)
       jekyll (~> 3.0)
@@ -145,7 +144,7 @@ GEM
       rubyzip (>= 1.3.0, < 3.0)
     jekyll-sass-converter (1.5.2)
       sass (~> 3.4)
-    jekyll-seo-tag (2.7.1)
+    jekyll-seo-tag (2.8.0)
       jekyll (>= 3.8, < 5.0)
     jekyll-sitemap (1.4.0)
       jekyll (>= 3.7, < 5.0)
@@ -214,32 +213,30 @@ GEM
     minitest (5.22.3)
     net-http (0.4.1)
       uri
-    nokogiri (1.16.2-aarch64-linux)
+    nokogiri (1.16.5-aarch64-linux)
       racc (~> 1.4)
-    nokogiri (1.16.2-arm-linux)
+    nokogiri (1.16.5-arm-linux)
       racc (~> 1.4)
-    nokogiri (1.16.2-arm64-darwin)
+    nokogiri (1.16.5-arm64-darwin)
       racc (~> 1.4)
-    nokogiri (1.16.2-x86-linux)
+    nokogiri (1.16.5-x86-linux)
       racc (~> 1.4)
-    nokogiri (1.16.2-x86_64-darwin)
+    nokogiri (1.16.5-x86_64-darwin)
       racc (~> 1.4)
-    nokogiri (1.16.2-x86_64-linux)
+    nokogiri (1.16.5-x86_64-linux)
       racc (~> 1.4)
     octokit (4.25.1)
       faraday (>= 1, < 3)
       sawyer (~> 0.9)
     pathutil (0.16.2)
       forwardable-extended (~> 2.6)
     public_suffix (4.0.7)
-    racc (1.7.3)
+    racc (1.8.1)
     rb-fsevent (0.11.2)
     rb-inotify (0.10.1)
       ffi (~> 1.0)
     rexml (3.3.9)
     rouge (3.26.0)
-    ruby-enum (0.9.0)
-      i18n
     rubyzip (2.3.2)
     safe_yaml (1.0.5)
     sass (3.7.4)
@@ -276,7 +273,7 @@ PLATFORMS
   x86_64-linux
 
 DEPENDENCIES
-  commonmarker (~> 0.17.6)
+  commonmarker (~> 0.23.10)
   github-pages
   jekyll-include-cache
   webrick (~> 1.7)

_layouts/home.html

@@ -9,9 +9,9 @@
 </p>
 
 <p>
-Thank you for your interest!
+For more information, check the links on the left side. *If you are on a smartphone, click on "follow me" to see the links. To contact me, please send me an email.
 </p>
 
 <p>
-For more information, please contact me by email.
+Thank you for your interest!
 </p>

_pages/01_projects.md

@@ -11,10 +11,17 @@ toc: true
 List of current or previous projects. 📚
 </p>
 
+### Open-source software (2024-...)
+<p style="font-size:15px" align="justify">
+To support open-source, I started to support voluntarily:
+- rOpenSci, by doing translations to Portuguese-BR;
+- libreoffice, by helping with bugfixing;
+</p>
+
 ### Data science training projects (ongoing)
 <p style="font-size:15px" align="justify">
-A list of small projects collected after different trainings on data science: https://tinyurl.com/mr36uy7v 
-Overarching collection of information on data analysis: https://tinyurl.com/46p9ewrv
+A list of small projects collected after different trainings on data science: [LINK](https://tinyurl.com/mr36uy7v). 
+Overarching collection of information on data analysis: [LINK](https://tinyurl.com/46p9ewrv).
 </p>
 
 ### DNA methylation associated with mental disorders (2021)

_site/01_projects/index.html

@@ -301,6 +301,7 @@ <h1 id="page-title" class="page__title" itemprop="headline">My projects
             <nav class="toc">
               <header><h4 class="nav__title"><i class="fas fa-file-alt"></i> On this page</h4></header>
               <ul class="toc__menu">
+  <li><a href="#open-source-software-2024-">Open-source software (2024-…)</a></li>
   <li><a href="#data-science-training-projects-ongoing">Data science training projects (ongoing)</a></li>
   <li><a href="#dna-methylation-associated-with-mental-disorders-2021">DNA methylation associated with mental disorders (2021)</a></li>
   <li><a href="#epigenetics-of-mental-disorders-2019-2021">Epigenetics of mental disorders (2019-2021)</a></li>
@@ -315,10 +316,17 @@ <h1 id="page-title" class="page__title" itemprop="headline">My projects
 List of current or previous projects. 📚
 </p>
 
+<h3 id="open-source-software-2024-">Open-source software (2024-…)</h3>
+<p style="font-size:15px" align="justify">
+To support open-source, I started to support voluntarily:
+- rOpenSci, by doing translations to Portuguese-BR;
+- libreoffice, by helping with bugfixing;
+</p>
+
 <h3 id="data-science-training-projects-ongoing">Data science training projects (ongoing)</h3>
 <p style="font-size:15px" align="justify">
-A list of small projects collected after different trainings on data science: https://tinyurl.com/mr36uy7v 
-Overarching collection of information on data analysis: https://tinyurl.com/46p9ewrv
+A list of small projects collected after different trainings on data science: [LINK](https://tinyurl.com/mr36uy7v). 
+Overarching collection of information on data analysis: [LINK](https://tinyurl.com/46p9ewrv).
 </p>
 
 <h3 id="dna-methylation-associated-with-mental-disorders-2021">DNA methylation associated with mental disorders (2021)</h3>

_site/assets/js/plugins/jquery.greedy-navigation.js

@@ -103,7 +103,11 @@ $(function() {
     clearTimeout(timer);
   });
 
-  $hlinks.on('mouseleave', function() {
+  $hlinks.on("click", function () {
+    // Hide the hidden links & remove the overlay when one is clicked.
+    $hlinks.addClass("hidden");
+    $btn.removeClass("close");
+  }).on('mouseleave', function() {
     // Mouse has left, start the timer
     timer = setTimeout(function() {
       $hlinks.addClass('hidden');

_site/feed.xml

@@ -1 +1 @@
-<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="3.9.0">Jekyll</generator><link href="http://localhost:4000/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/" rel="alternate" type="text/html" /><updated>2024-10-30T19:49:04+01:00</updated><id>http://localhost:4000/feed.xml</id><title type="html">Samuel Carleial Fernandes</title><subtitle></subtitle><author><name>About me</name></author></feed>
+<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="3.9.0">Jekyll</generator><link href="http://localhost:4000/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/" rel="alternate" type="text/html" /><updated>2024-12-16T18:25:15+01:00</updated><id>http://localhost:4000/feed.xml</id><title type="html">Samuel Carleial Fernandes</title><subtitle></subtitle><author><name>About me</name></author></feed>

_site/index.html

@@ -289,11 +289,11 @@ <h1 id="page-title" class="page__title"></h1>
 </p>
 
 <p>
-Thank you for your interest!
+For more information, check the links on the left side. *If you are on a smartphone, click on "follow me" to see the links. To contact me, please send me an email.
 </p>
 
 <p>
-For more information, please contact me by email.
+Thank you for your interest!
 </p>
   </div>
 </div>

_site/sitemap.xml

@@ -23,6 +23,10 @@
 <loc>http://localhost:4000/assets/academicons-1.9.4/</loc>
 </url>
 <url>
+<loc>http://localhost:4000/assets/certificates/certificate%20-%20Project%20Management%20Basics%20-%20PMI.pdf</loc>
+<lastmod>2024-11-06T21:17:32+01:00</lastmod>
+</url>
+<url>
 <loc>http://localhost:4000/assets/certificates/certificate%20-%20SEM%20in%20R%20Cambridge.pdf</loc>
 <lastmod>2021-04-27T21:38:02+02:00</lastmod>
 </url>