Create python-publish.yml #11
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Python tests | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| test: | |
| name: Run tests on ${{ matrix.os }} with Python ${{ matrix.python }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| torch: [{base: '1.13.0', vision: '0.14.0'}, {base: '2.5.1', vision: '0.20.1'}] | |
| python: ["3.9", "3.12"] | |
| exclude: | |
| - python: '3.12' | |
| torch: {base: '1.13.0', vision: '0.14.0'} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| # install pytorch on different platform | |
| - name: Install torch on mac | |
| if: startsWith(matrix.os, 'macOS') | |
| run: pip install --no-cache-dir torch==${{ matrix.torch.base }} torchvision==${{ matrix.torch.vision }} | |
| - name: Install torch on Windows | |
| if: startsWith(matrix.os, 'windows') | |
| run: pip install --no-cache-dir torch==${{ matrix.torch.base }} torchvision==${{ matrix.torch.vision }} | |
| - name: Install torch on ubuntu | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: | | |
| sudo sed -i 's/azure\.//' /etc/apt/sources.list | |
| sudo apt update | |
| sudo apt install -y google-perftools | |
| pip install --no-cache-dir torch==${{ matrix.torch.base }}+cpu torchvision==${{ matrix.torch.vision }}+cpu --index-url https://download.pytorch.org/whl/cpu | |
| - name: Install testing dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install wheel | |
| pip install -r requirements-dev.txt | |
| pip install -r requirements.txt | |
| pip install -e . | |
| - name: Force old numpy for old torch | |
| if: ${{ matrix.torch.base == '1.13.0' }} | |
| run: pip install --upgrade 'numpy<2.0' | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Run tests on Windows | |
| if: startsWith(matrix.os, 'windows') | |
| env: | |
| PYTHONDONTWRITEBYTECODE: 1 | |
| run: | | |
| pytest -vv --cov=IMDLBenCo --cov-report=xml tests/pytests | |
| - name: Run '${{ matrix.testmarker }}' tests on Linux / Mac | |
| if: ${{ !startsWith(matrix.os, 'windows') }} | |
| env: | |
| # LD_PRELOAD: /usr/lib/x86_64-linux-gnu/libtcmalloc.so.4 | |
| PYTHONDONTWRITEBYTECODE: 1 | |
| run: | | |
| pytest -vv --cov=IMDLBenCo --cov-report=xml tests/pytests | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |