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32 Open 242 Closed
32 Open 242 Closed
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Issues list

milo mixed effect models enhancement New feature or request
#747 opened Apr 17, 2025 by liezeltamon
Optimize guide assignment for sparse enhancement New feature or request
#736 opened Apr 4, 2025 by Zethson
@Zethson
Move differential expression analysis to separate package enhancement New feature or request
#730 opened Mar 19, 2025 by grst
2
pertpy Installation Fails on Google Colab Due to numpy AttributeError bug Something isn't working
#724 opened Mar 8, 2025 by LCGaoZzz
1
DIALOGUE v2 enhancement New feature or request
#723 opened Mar 6, 2025 by Zethson
4 tasks
Mixture Model stores arrays in .uns which don't allow the AnnData object to be written bug Something isn't working
#722 opened Mar 5, 2025 by Zethson
@stefanpeidli
Suggestion for a better layout of coda plot_boxplots() subplots enhancement New feature or request
#718 opened Feb 27, 2025 by shihsama
1
Model doesn't complain if a complex interaction contrast is specified that wasn't fit with the interaction in the design bug Something isn't working
#693 opened Jan 4, 2025 by Zethson
RRuntimeError: Error in colSums(x) : 'x' must be numeric bug Something isn't working
#681 opened Nov 29, 2024 by ahmed-agami
8
Milo neighborhood groups as in MiloR enhancement New feature or request
#680 opened Nov 21, 2024 by MaximilianNuber
1
target col naming for perturbation spaces bug Something isn't working
#673 opened Oct 17, 2024 by Zethson
Feature pertpy use-cases in our tutorial enhancement New feature or request
#642 opened Aug 19, 2024 by Zethson
@Lilly-May
1
possible to compute distances on a subset of genes? enhancement New feature or request
#640 opened Aug 14, 2024 by aterceros
@Zethson
3
Implement MiloDE (diff. expr. testing on top of milo framework) enhancement New feature or request
#635 opened Jul 30, 2024 by stefanpeidli
Update docs with new comparison metrics enhancement New feature or request
#630 opened Jun 24, 2024 by wxicu
FindConservedMarkers implementaion enhancement New feature or request
#629 opened Jun 22, 2024 by SNOL2
1
Improve DE tutorial enhancement New feature or request
#615 opened May 27, 2024 by grst
@Zethson
1
Add linear mixed effects model to DE interface enhancement New feature or request
#614 opened May 27, 2024 by grst
Parallelize DE methods that support it enhancement New feature or request
#613 opened May 27, 2024 by grst
HTML widget for DE Model classes enhancement New feature or request
#611 opened May 27, 2024 by grst
Expression prediction tutorial enhancement New feature or request
#587 opened May 2, 2024 by Zethson
1 of 3 tasks
@Zethson @Hrovatin @eroell
1
annotate_compounds for combinations of drugs enhancement New feature or request
#582 opened Apr 9, 2024 by MUCDK
@wxicu
2
Add dataloader for sciplex-GxE enhancement New feature or request
#556 opened Mar 11, 2024 by Zethson
Add dataloader for Jiang et al enhancement New feature or request
#542 opened Feb 20, 2024 by Zethson
1
Get cleaner URLs for documentation enhancement New feature or request
#532 opened Feb 9, 2024 by Zethson
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