checkm

For bacteria, the LORA pipeline can make use of the checkm software (Parks et al, PUBMED https://pubmed.ncbi.nlm.nih.gov/25977477/)

checkm checks for the completeness of your assembly. To do so, it requires the taxon rank and name from a large set of reference genome. The ranks are obvious (e.g. class, order, species, genus). Concerning the name, when using LORA you will need to set with it with the option --checkm-name ; here is the list of possible names (and ranks)

phylum    Acidobacteria                                           15           399              276       
phylum    Actinobacteria                                         731           204              119       
phylum    Aquificae                                               18           486              369       
phylum    Bacteroidetes                                          419           286              195       
phylum    Chlamydiae                                              64           455              185       
phylum    Chlorobi                                                12           612              333       
phylum    Chloroflexi                                             20           225              149       
phylum    Crenarchaeota                                           54           217              168       
phylum    Cyanobacteria                                          129           472              368       
phylum    Deferribacteres                                         6            564              339       
phylum    Deinococcus-Thermus                                     40           528              359       
phylum    Dictyoglomi                                             2            1060             103       
phylum    Euryarchaeota                                          146           188              125       
phylum    Firmicutes                                             1349          172               99       
phylum    Fusobacteria                                            32           289              159       
phylum    Ignavibacteriae                                         2            1003             383       
phylum    Nitrospirae                                             4            676              379       
phylum    Planctomycetes                                          11           360              256       
phylum    Proteobacteria                                         2343          182              119       
phylum    Spirochaetes                                            71           218              127       
phylum    Synergistetes                                           13           452              160       
phylum    Tenericutes                                            119           177              105       
phylum    Thaumarchaeota                                          4            549              265       
phylum    Thermodesulfobacteria                                   5            813              440       
phylum    Thermotogae                                             14           460              267       
phylum    Verrucomicrobia                                         12           346              245       
class     Acidobacteriia                                          10           572              395       
class     Aciduliprofundum                                        2            763              130       
class     Actinobacteria                                         729           205              119       
class     Alphaproteobacteria                                    648           225              148       
class     Aquificae                                               18           486              369       
class     Archaeoglobi                                            5            619              392       
class     Bacilli                                                821           250              136       
class     Bacteroidetes Order II. Incertae sedis                  5            801              466       
class     Bacteroidia                                            211           401              266       
class     Betaproteobacteria                                     322           387              234       
class     Chlamydiia                                              64           455              185       
class     Chlorobia                                               12           612              333       
class     Chloroflexi                                             9            452              315       
class     Chroococcales                                           55           490              378       
class     Clostridia                                             446           196              110       
class     Cytophagia                                              48           438              328       
class     Deferribacteres                                         6            564              339       
class     Dehalococcoidetes                                       5            755               54       
class     Deinococci                                              40           528              359       
class     Deltaproteobacteria                                     93           197              125       
class     Dictyoglomia                                            2            1060             103       
class     Epsilonproteobacteria                                  111           445              271       
class     Erysipelotrichi                                         18           301              159       
class     Flavobacteriia                                         126           321              202       
class     Fusobacteriia                                           32           289              159       
class     Gammaproteobacteria                                    1167          280              178       
class     Halobacteria                                            59           367              241       
class     Holophagae                                              2            883              459       
class     Ignavibacteria                                          2            1003             383       
class     Methanobacteria                                         12           513              264       
class     Methanococci                                            16           610              439       
class     Methanomicrobia                                         29           248              165       
class     Mollicutes                                             119           177              105       
class     Negativicutes                                           64           334              167       
class     Nitrosopumilales                                        2            714              109       
class     Nitrospira                                              4            676              379       
class     Nostocales                                              18           732              508       
class     Opitutae                                                4            676              427       
class     Oscillatoriales                                         25           545              415       
class     Planctomycetia                                          11           360              256       
class     Pleurocapsales                                          6            840              624       
class     Prochlorales                                            18           806              240       
class     Solirubrobacterales                                     2            995              398       
class     Sphingobacteriia                                        27           334              233       
class     Spirochaetia                                            71           218              127       
class     Stigonematales                                          5            1007             576       
class     Synergistia                                             13           452              160       
class     Thermococci                                             16           500              315       
class     Thermodesulfobacteria                                   5            813              440       
class     Thermomicrobia                                          2            933              336       
class     Thermoplasmata                                          4            563              310       
class     Thermoprotei                                            54           217              168       
class     Thermotogae                                             14           460              267       
class     Verrucomicrobiae                                        7            403              284       
class     Zetaproteobacteria                                      2            1329             184       
order     Acholeplasmatales                                       12           176               88       
order     Acidilobales                                            3            558              236       
order     Acidithiobacillales                                     6            795              254       
order     Acidobacteriales                                        10           572              395       
order     Aciduliprofundum                                        2            763              130       
order     Actinomycetales                                        620           256              152       
order     Aeromonadales                                           23           456              237       
order     Alteromonadales                                        116           519              267       
order     Aquificales                                             18           486              369       
order     Archaeoglobales                                         5            619              392       
order     Bacillales                                             331           319              134       
order     Bacteroidales                                          210           402              267       
order     Bacteroidetes Order II. Incertae sedis                  5            801              466       
order     Bankia                                                  2            1388             332       
order     Bdellovibrionales                                       5            466              290       
order     Bifidobacteriales                                       77           464              220       
order     Burkholderiales                                        194           427              216       
order     Campylobacterales                                      107           458              273       
order     Cardiobacteriales                                       3            807              349       
order     Caulobacterales                                         15           644              366       
order     Chlamydiales                                            64           455              185       
order     Chlorobiales                                            12           612              333       
order     Chloroflexales                                          8            501              342       
order     Chromatiales                                            92           595              283       
order     Chroococcales                                           55           490              378       
order     Clostridiales                                          395           202              114       
order     Coriobacteriales                                        23           304              155       
order     Cytophagales                                            48           438              328       
order     Deferribacterales                                       6            564              339       
order     Dehalococcoidales                                       5            755               54       
order     Deinococcales                                           17           563              388       
order     Desulfobacterales                                       20           320              189       
order     Desulfovibrionales                                      40           454              252       
order     Desulfurellales                                         4            817              252       
order     Desulfurococcales                                       14           287              213       
order     Desulfuromonadales                                      13           550              283       
order     Dictyoglomales                                          2            1060             103       
order     Enterobacteriales                                      262           297              121       
order     Entomoplasmatales                                       9            362              151       
order     Erysipelotrichales                                      18           301              159       
order     Flavobacteriales                                       126           321              202       
order     Fusobacteriales                                         32           289              159       
order     Halanaerobiales                                         7            504              189       
order     Halobacteriales                                         59           367              241       
order     Holophagales                                            2            883              459       
order     Hydrogenophilales                                       3            1205             209       
order     Ignavibacteriales                                       2            1003             383       
order     Lactobacillales                                        490           335              183       
order     Legionellales                                           23           545              269       
order     Mariprofundales                                         2            1329             184       
order     Methanobacteriales                                      12           513              264       
order     Methanocellales                                         3            712              317       
order     Methanococcales                                         16           610              439       
order     Methanomicrobiales                                      11           465              230       
order     Methanosarcinales                                       14           438              270       
order     Methylococcales                                         15           684              348       
order     Methylophilales                                         16           685              234       
order     Mycoplasmatales                                         98           217              127       
order     Myxococcales                                            8            534              348       
order     Nautiliales                                             4            712              351       
order     Neisseriales                                            69           658              446       
order     Nitrosomonadales                                        7            851              314       
order     Nitrosopumilales                                        2            714              109       
order     Nitrospirales                                           4            676              379       
order     Nostocales                                              18           732              508       
order     Oceanospirillales                                       41           497              229       
order     Opitutales                                              3            859              521       
order     Oscillatoriales                                         25           545              415       
order     Pasteurellales                                          83           767              440       
order     Planctomycetales                                        10           370              265       
order     Pleurocapsales                                          6            840              624       
order     Prochlorales                                            18           806              240       
order     Pseudomonadales                                        274           549              326       
order     Rhizobiales                                            349           407              244       
order     Rhodobacterales                                        104           504              327       
order     Rhodocyclales                                           26           625              264       
order     Rhodospirillales                                        57           367              228       
order     Rickettsiales                                           81           325              210       
order     Rubrobacterales                                         2            991              269       
order     Selenomonadales                                         64           334              167       
order     Solirubrobacterales                                     4            721              307       
order     Sphingobacteriales                                      27           334              233       
order     Sphingomonadales                                        31           490              270       
order     Spirochaetales                                          71           218              127       
order     Stigonematales                                          5            1007             576       
order     Sulfolobales                                            20           499              141       
order     Synergistales                                           13           452              160       
order     Thermales                                               23           585              331       
order     Thermoanaerobacterales                                  44           308              158       
order     Thermococcales                                          16           500              315       
order     Thermodesulfobacteriales                                5            813              440       
order     Thermoplasmatales                                       4            563              310       
order     Thermoproteales                                         13           315              257       
order     Thermotogales                                           14           460              267       
order     Thiotrichales                                           64           406              251       
order     Verrucomicrobiales                                      7            403              284       
order     Vibrionales                                             80           922              367       
order     Xanthomonadales                                         63           499              264       
family    Acetobacteraceae                                        30           473              264       
family    Acholeplasmataceae                                      12           176               88       
family    Acidaminococcaceae                                      7            677              256       
family    Acidilobaceae                                           2            645              144       
family    Acidithiobacillaceae                                    5            907              200       
family    Acidobacteriaceae                                       9            575              396       
family    Aciduliprofundum                                        2            763              130       
family    Actinomycetaceae                                        42           420              211       
family    Actinopolysporaceae                                     3            872              433       
family    Aerococcaceae                                           10           424              195       
family    Aeromonadaceae                                          17           841              368       
family    Alcaligenaceae                                          27           486              218       
family    Alcanivoracaceae                                        8            877              350       
family    Alicyclobacillaceae                                     9            608              229       
family    Alteromonadaceae                                        38           590              296       
family    Anaplasmataceae                                         18           319              212       
family    Aquificaceae                                            10           656              475       
family    Archaeoglobaceae                                        5            619              392       
family    Arthrospira                                             2            1432             419       
family    Aurantimonadaceae                                       4            883              434       
family    Bacillaceae                                            162           418              155       
family    Bacteroidaceae                                          96           524              282       
family    Bankia                                                  2            1388             332       
family    Bartonellaceae                                          29           708              188       
family    Bdellovibrionaceae                                      4            561              331       
family    Beijerinckiaceae                                        4            1024             488       
family    Bifidobacteriaceae                                      77           464              220       
family    Blattabacteriaceae                                      6            547               16       
family    Brachyspiraceae                                         10           783              458       
family    Bradyrhizobiaceae                                       52           619              276       
family    Brevibacteriaceae                                       3            833              259       
family    Brucellaceae                                            94           1206             241       
family    Burkholderiaceae                                        94           568              224       
family    Campylobacteraceae                                      66           505              274       
family    Cardiobacteriaceae                                      3            807              349       
family    Carnobacteriaceae                                       7            469              197       
family    Caulobacteraceae                                        15           644              366       
family    Cellulomonadaceae                                       7            766              260       
family    Chitinophagaceae                                        8            634              396       
family    Chlamydiaceae                                           59           590               92       
family    Chlorobiaceae                                           12           612              333       
family    Chloroflexaceae                                         7            570              386       
family    Chromatiaceae                                           14           545              300       
family    Chroococcidiopsis                                       2            1159             811       
family    Clostridiaceae                                          10           387              178       
family    Clostridiales Family XI. Incertae Sedis                 20           345              186       
family    Clostridiales Family XVII. Incertae Sedis               5            682              263       
family    Colwelliaceae                                           3            1371             293       
family    Comamonadaceae                                          41           669              297       
family    Conexibacteraceae                                       2            1064             347       
family    Coriobacteriaceae                                       23           304              155       
family    Corynebacteriaceae                                      80           585              243       
family    Coxiellaceae                                            5            1047             146       
family    Cryomorphaceae                                          3            782              490       
family    Cyanobacterium                                          4            650              477       
family    Cyanobium                                               2            1225             277       
family    Cyanothece                                              8            865              653       
family    Cyclobacteriaceae                                       13           720              342       
family    Cytophagaceae                                           30           383              278       
family    Deferribacteraceae                                      5            768              300       
family    Dehalococcoidaceae                                      5            755               54       
family    Deinococcaceae                                          16           630              426       
family    Dermabacteraceae                                        2            876              242       
family    Dermacoccaceae                                          3            776              316       
family    Dermatophilaceae                                        3            866              346       
family    Desulfobacteraceae                                      14           394              216       
family    Desulfobulbaceae                                        6            626              290       
family    Desulfohalobiaceae                                      3            774              358       
family    Desulfomicrobiaceae                                     2            1255             271       
family    Desulfovibrionaceae                                     34           497              270       
family    Desulfurellaceae                                        4            817              252       
family    Desulfurobacteriaceae                                   2            965              410       
family    Desulfurococcaceae                                      12           310              223       
family    Dictyoglomaceae                                         2            1060             103       
family    Ectothiorhodospiraceae                                  77           837              294       
family    Enterobacteriaceae                                     262           297              121       
family    Enterococcaceae                                         55           542              226       
family    Entomoplasmataceae                                      8            383              120       
family    Erysipelotrichaceae                                     18           301              159       
family    Erythrobacteraceae                                      4            1071             266       
family    Eubacteriaceae                                          22           221              140       
family    Exiguobacterium                                         11           1039             263       
family    Fangia                                                  2            1383             144       
family    Ferrimonadaceae                                         4            1311             393       
family    Fischerella                                             4            1081             585       
family    Flammeovirgaceae                                        5            626              437       
family    Flavobacteriaceae                                      115           457              309       
family    Francisellaceae                                         40           787              238       
family    Frankiaceae                                             12           569              282       
family    Fusobacteriaceae                                        23           431              189       
family    Gemella                                                 5            787              169       
family    Geobacteraceae                                          11           631              310       
family    Geodermatophilaceae                                     5            878              296       
family    Gloeocapsa                                              2            1115             740       
family    Glycomycetaceae                                         4            840              375       
family    Gordoniaceae                                            26           670              298       
family    Hahellaceae                                             3            1080             468       
family    Halanaerobiaceae                                        3            702              192       
family    Halobacteriaceae                                        58           371              244       
family    Halobacteroidaceae                                      4            788              219       
family    Halomonadaceae                                          15           684              246       
family    Helicobacteraceae                                       41           498              302       
family    Holophagaceae                                           2            883              459       
family    Hydrogenophilaceae                                      3            1205             209       
family    Hydrogenothermaceae                                     6            840              402       
family    Hyphomicrobiaceae                                       12           551              325       
family    Hyphomonadaceae                                         10           761              398       
family    Idiomarinaceae                                          5            1057             247       
family    Intrasporangiaceae                                      8            651              328       
family    Jonesiaceae                                             2            1211             191       
family    Lachnospiraceae                                         86           312              160       
family    Lactobacillaceae                                       143           396              153       
family    Legionellaceae                                          18           695              290       
family    Leptolyngbya                                            3            917              660       
family    Leptospiraceae                                          5            902              533       
family    Leptotrichiaceae                                        9            467              239       
family    Leuconostocaceae                                        35           463              209       
family    Listeriaceae                                            25           873              158       
family    Lyngbya                                                 2            1111             753       
family    Mariprofundaceae                                        2            1329             184       
family    Methanobacteriaceae                                     11           543              255       
family    Methanocaldococcaceae                                   7            743              524       
family    Methanocellaceae                                        3            712              317       
family    Methanococcaceae                                        9            669              370       
family    Methanocorpusculaceae                                   2            889              135       
family    Methanomicrobiaceae                                     4            645              231       
family    Methanoregulaceae                                       4            620              220       
family    Methanosaetaceae                                        3            700              354       
family    Methanosarcinaceae                                      10           579              256       
family    Methylobacteriaceae                                     20           455              308       
family    Methylococcaceae                                        15           684              348       
family    Methylocystaceae                                        11           610              373       
family    Methylophilaceae                                        14           873              269       
family    Microbacteriaceae                                       30           416              190       
family    Microchaetaceae                                         2            1208             646       
family    Micrococcaceae                                          38           459              217       
family    Microcoleus                                             2            1191             754       
family    Micromonosporaceae                                      55           713              273       
family    Moraxellaceae                                           86           689              365       
family    Mycobacteriaceae                                       101           682              290       
family    Mycoplasmataceae                                        98           217              127       
family    Myxococcaceae                                           6            707              364       
family    Nakamurellaceae                                         2            1011             427       
family    Nautiliaceae                                            4            712              351       
family    Neisseriaceae                                           69           658              446       
family    Nitrosomonadaceae                                       7            851              314       
family    Nitrosopumilaceae                                       2            714              109       
family    Nitrospiraceae                                          4            676              379       
family    Nocardiaceae                                            21           559              269       
family    Nocardioidaceae                                         11           470              262       
family    Nocardiopsaceae                                         7            826              316       
family    Nostocaceae                                             13           800              536       
family    Oceanospirillaceae                                      14           636              305       
family    Opitutaceae                                             3            859              521       
family    Oscillatoria                                            3            1076             673       
family    Oxalobacteraceae                                        16           580              265       
family    Paenibacillaceae                                        44           492              188       
family    Parachlamydiaceae                                       3            775              331       
family    Pasteurellaceae                                         83           767              440       
family    Patulibacteraceae                                       2            1012             347       
family    Pelagibacteraceae                                       15           695              142       
family    Pelobacteraceae                                         2            958              487       
family    Peptococcaceae                                          23           391              153       
family    Peptostreptococcaceae                                  184           287              151       
family    Phyllobacteriaceae                                      26           598              258       
family    Piscirickettsiaceae                                     16           638              292       
family    Planctomycetaceae                                       10           370              265       
family    Planktothrix                                            6            1307             425       
family    Planococcaceae                                          6            823              233       
family    Pleurocapsa                                             2            1138             783       
family    Porphyromonadaceae                                      37           455              310       
family    Prevotellaceae                                          69           553              298       
family    Prochlorococcaceae                                      18           806              240       
family    Promicromonosporaceae                                   6            783              376       
family    Propionibacteriaceae                                    40           532              294       
family    Pseudanabaena                                           2            1172             781       
family    Pseudoalteromonadaceae                                  21           782              307       
family    Pseudomonadaceae                                       186           800              302       
family    Pseudonocardiaceae                                      32           364              201       
family    Psychromonadaceae                                       5            1062             326       
family    Pyrodictiaceae                                          2            609              346       
family    Rhizobiaceae                                            85           515              225       
family    Rhodobacteraceae                                        91           528              341       
family    Rhodobiaceae                                            2            1121             424       
family    Rhodocyclaceae                                          25           641              269       
family    Rhodospirillaceae                                       26           300              163       
family    Rhodothermaceae                                         5            801              466       
family    Rickettsiaceae                                          46           528              196       
family    Rikenellaceae                                           6            648              386       
family    Rivulariaceae                                           3            1070             642       
family    Rubrivivax                                              3            1586             343       
family    Rubrobacteraceae                                        2            991              269       
family    Ruminococcaceae                                         20           284              161       
family    Saprospiraceae                                          5            671              479       
family    Shewanellaceae                                          26           989              339       
family    Sinobacteraceae                                         4            1083             398       
family    Solirubrobacteraceae                                    2            995              398       
family    Sphingobacteriaceae                                     11           575              344       
family    Sphingomonadaceae                                       27           501              275       
family    Spirochaetaceae                                         56           235              124       
family    Sporolactobacillaceae                                   2            1066             320       
family    Staphylococcaceae                                       64           642              181       
family    Streptococcaceae                                       240           524              282       
family    Streptomycetaceae                                       58           506              264       
family    Streptosporangiaceae                                    2            1116             473       
family    Succinivibrionaceae                                     6            637              317       
family    Sulfolobaceae                                           19           526              149       
family    Sutterellaceae                                          4            792              261       
family    Synechococcus                                           25           554              425       
family    Synechocystis                                           5            1099             794       
family    Synergistaceae                                          13           452              160       
family    Syntrophomonadaceae                                     3            744              271       
family    Teredinibacter                                          10           1162             360       
family    Thermaceae                                              23           585              331       
family    Thermoactinomycetaceae                                  2            1027             387       
family    Thermoanaerobacteraceae                                 24           438              193       
family    Thermoanaerobacterales Family III. Incertae Sedis       16           599              251       
family    Thermococcaceae                                         16           500              315       
family    Thermodesulfobacteriaceae                               5            813              440       
family    Thermodesulfobiaceae                                    3            538              284       
family    Thermomonosporaceae                                     4            839              346       
family    Thermoplasmataceae                                      2            733              167       
family    Thermoproteaceae                                        12           410              333       
family    Thermotogaceae                                          14           460              267       
family    Thiomonas                                               3            1202             366       
family    Thiotrichaceae                                          6            764              473       
family    Veillonellaceae                                         57           345              171       
family    Verrucomicrobiaceae                                     5            505              342       
family    Vibrionaceae                                            80           922              367       
family    Xanthobacteraceae                                       9            824              433       
family    Xanthomonadaceae                                        58           540              311       
genus     Acetobacter                                             11           1037             392       
genus     Acholeplasma                                            7            309              151       
genus     Achromobacter                                           5            1298             427       
genus     Acidaminococcus                                         5            910              256       
genus     Acidilobus                                              2            645              144       
genus     Acidiphilium                                            3            1244             339       
genus     Acidithiobacillus                                       5            907              200       
genus     Acidobacterium                                          2            1151             582       
genus     Acidovorax                                              9            931              335       
genus     Aciduliprofundum                                        2            763              130       
genus     Acinetobacter                                           66           883              281       
genus     Actinobacillus                                          18           1004             589       
genus     Actinobaculum                                           5            606              222       
genus     Actinomadura                                            3            940              376       
genus     Actinomyces                                             27           432              214       
genus     Actinoplanes                                            3            1041             394       
genus     Actinopolyspora                                         3            872              433       
genus     Aequorivita                                             2            1087             283       
genus     Aerococcus                                              2            719              247       
genus     Aeromonas                                               12           1380             463       
genus     Aggregatibacter                                         13           991              357       
genus     Agrobacterium                                           12           994              379       
genus     Agromyces                                               2            1096             287       
genus     Ahrensia                                                2            1213             422       
genus     Alcaligenes                                             2            1577             235       
genus     Alcanivorax                                             6            1175             317       
genus     Algoriphagus                                            5            947              361       
genus     Aliagarivorans                                          2            1740             251       
genus     Alicycliphilus                                          2            1650             258       
genus     Alicyclobacillus                                        8            664              240       
genus     Alishewanella                                           2            1677             232       
genus     Alistipes                                               5            703              335       
genus     Alkaliphilus                                            2            970              326       
genus     Alloscardovia                                           2            950              116       
genus     Alteromonas                                             6            1419             314       
genus     Aminobacterium                                          2            950              145       
genus     Amycolatopsis                                           12           644              302       
genus     Anabaena                                                5            992              584       
genus     Anaerococcus                                            6            665              181       
genus     Anaeromyxobacter                                        4            1162             375       
genus     Anaplasma                                               2            688              127       
genus     Anoxybacillus                                           5            1141             212       
genus     Aquimarina                                              2            1084             373       
genus     Archaeoglobus                                           4            662              415       
genus     Arcobacter                                              8            804              234       
genus     Arenibacter                                             2            1200             269       
genus     Arsenophonus                                            4            640              164       
genus     Arthrobacter                                            25           473              190       
genus     Arthrospira                                             2            1432             419       
genus     Asticcacaulis                                           3            1116             409       
genus     Atopobium                                               8            486              194       
genus     Aurantimonas                                            2            1288             356       
genus     Azoarcus                                                2            1311             376       
genus     Azorhizobium                                            2            1547             390       
genus     Azospira                                                2            1578             218       
genus     Azospirillum                                            3            1038             549       
genus     Azotobacter                                             3            1930             269       
genus     Bacillus                                               122           491              170       
genus     Bacteroides                                             96           524              282       
genus     Bankia                                                  2            1388             332       
genus     Barnesiella                                             2            1045             230       
genus     Bartonella                                              29           708              188       
genus     Bdellovibrio                                            3            843              296       
genus     Bifidobacterium                                         57           582              204       
genus     Blastococcus                                            2            1123             317       
genus     Blattabacterium                                         6            547               16       
genus     Blautia                                                 7            649              291       
genus     Bordetella                                              9            892              277       
genus     Borrelia                                                17           474               66       
genus     Brachyspira                                             10           783              458       
genus     Bradyrhizobium                                          36           826              337       
genus     Brevibacillus                                           4            1162             391       
genus     Brevibacterium                                          3            833              259       
genus     Brevundimonas                                           6            952              452       
genus     Brucella                                                90           1371             236       
genus     Buchnera                                                10           380               35       
genus     Burkholderia                                            66           724              235       
genus     Butyricimonas                                           2            1102             296       
genus     Butyrivibrio                                            31           578              245       
genus     Caldicellulosiruptor                                    11           1010             169       
genus     Calothrix                                               2            1244             726       
genus     Campylobacter                                           55           598              263       
genus     Candidatus Arthromitus                                  5            889              153       
genus     Candidatus Blochmannia                                  3            714               3        
genus     Candidatus Liberibacter                                 3            764              141       
genus     Candidatus Pelagibacter                                 12           715              144       
genus     Candidatus Pelagibacter-like                            3            911               76       
genus     Candidatus Phytoplasma                                  4            294               86       
genus     Capnocytophaga                                          15           728              514       
genus     Carboxydothermus                                        2            1295             139       
genus     Cardiobacterium                                         2            1153             474       
genus     Caulobacter                                             4            1219             375       
genus     Cellulomonas                                            6            805              257       
genus     Cellulophaga                                            2            1092             357       
genus     Chitinilyticum                                          2            1527             343       
genus     Chlamydia                                               43           609               88       
genus     Chlamydophila                                           16           616               71       
genus     Chlorobaculum                                           2            1098             186       
genus     Chlorobium                                              6            820              277       
genus     Chloroflexus                                            5            659              449       
genus     Chroococcidiopsis                                       2            1159             811       
genus     Chryseobacterium                                        6            812              414       
genus     Citreicella                                             2            1369             390       
genus     Citrobacter                                             8            1566             347       
genus     Citromicrobium                                          2            1356             186       
genus     Clavibacter                                             2            1152             228       
genus     Clostridium                                            180           308              161       
genus     Cohnella                                                3            1072             306       
genus     Collinsella                                             2            829              315       
genus     Colwellia                                               3            1371             293       
genus     Comamonas                                               5            1047             399       
genus     Commensalibacter                                        2            1241             137       
genus     Conchiformibius                                         2            1237             317       
genus     Coprobacillus                                           3            833              331       
genus     Coprococcus                                             3            780              260       
genus     Coprothermobacter                                       2            870               70       
genus     Corynebacterium                                         80           585              243       
genus     Coxiella                                                5            1047             146       
genus     Cronobacter                                             4            1838             338       
genus     Cupriavidus                                             8            1163             352       
genus     Curtobacterium                                          2            952              330       
genus     Curvibacter                                             2            1707             367       
genus     Cyanobacterium                                          4            650              477       
genus     Cyanobium                                               2            1225             277       
genus     Cyanothece                                              8            865              653       
genus     Cycloclasticus                                          2            1507              85       
genus     Cytophaga                                               3            745              464       
genus     Dechloromonas                                           4            1203             276       
genus     Dehalobacter                                            3            1160             157       
genus     Dehalococcoides                                         5            755               54       
genus     Deinococcus                                             16           630              426       
genus     Delftia                                                 3            1683             409       
genus     Desulfatibacillum                                       2            1377             388       
genus     Desulfobacterium                                        3            680              365       
genus     Desulfobulbus                                           4            863              276       
genus     Desulfomicrobium                                        2            1255             271       
genus     Desulfosporosinus                                       4            915              249       
genus     Desulfotignum                                           2            1216             274       
genus     Desulfotomaculum                                        9            640              214       
genus     Desulfovibrio                                           31           431              224       
genus     Desulfurococcus                                         4            599              129       
genus     Dialister                                               4            695              210       
genus     Dickeya                                                 4            1671             311       
genus     Dictyoglomus                                            2            1060             103       
genus     Dorea                                                   4            835              261       
genus     Dyadobacter                                             4            1056             319       
genus     Dysgonomonas                                            3            912              480       
genus     Echinicola                                              2            1196             350       
genus     Ectothiorhodospira                                      2            1465             274       
genus     Edwardsiella                                            2            1903             174       
genus     Eggerthella                                             4            843              301       
genus     Ehrlichia                                               6            704               87       
genus     Elizabethkingia                                         3            1251             240       
genus     Ensifer                                                 26           1043             323       
genus     Enterobacter                                            13           1338             370       
genus     Enterococcus                                            51           672              259       
genus     Enterovibrio                                            2            1819             389       
genus     Entomoplasma                                            3            460              109       
genus     Eremococcus                                             2            922              109       
genus     Erwinia                                                 8            1420             280       
genus     Erysipelothrix                                          2            843               95       
genus     Erythrobacter                                           3            1146             256       
genus     Escherichia                                             27           1212             320       
genus     Eubacterium                                             18           234              157       
genus     Exiguobacterium                                         11           1039             263       
genus     Facklamia                                               5            575              184       
genus     Faecalibacterium                                        2            1019             264       
genus     Fangia                                                  2            1383             144       
genus     Ferrimonas                                              4            1311             393       
genus     Finegoldia                                              5            878              111       
genus     Fischerella                                             4            1081             585       
genus     Flavobacterium                                          20           575              320       
genus     Flexibacter                                             3            877              663       
genus     Francisella                                             40           787              238       
genus     Frankia                                                 11           597              285       
genus     Fusobacterium                                           21           502              210       
genus     Gallibacterium                                          2            1519             168       
genus     Gardnerella                                             14           621              237       
genus     Gemella                                                 5            787              169       
genus     Geobacillus                                             15           823              228       
genus     Geobacter                                               10           732              332       
genus     Gillisia                                                2            1096             276       
genus     Glaciecola                                              9            1063             369       
genus     Gloeocapsa                                              2            1115             740       
genus     Gluconacetobacter                                       4            1030             240       
genus     Gluconobacter                                           3            1076             207       
genus     Glycomyces                                              2            1177             326       
genus     Gordonia                                                26           670              298       
genus     Gramella                                                3            1089             213       
genus     Granulicatella                                          2            891              249       
genus     Granulicella                                            2            1075             507       
genus     Haemophilus                                             35           829              480       
genus     Hahella                                                 2            1567             475       
genus     Halalkalicoccus                                         2            1003             212       
genus     Halanaerobium                                           2            898              186       
genus     Haliea                                                  2            1214             329       
genus     Haloarcula                                              7            842              250       
genus     Halobacillus                                            3            1266             292       
genus     Halobacterium                                           3            704              224       
genus     Halobiforma                                             2            1026             320       
genus     Halococcus                                              2            767              347       
genus     Haloferax                                               10           763              229       
genus     Halomicrobium                                           2            970              233       
genus     Halomonas                                               11           840              268       
genus     Haloquadratum                                           3            798              192       
genus     Halorubrum                                              4            710              295       
genus     Haloterrigena                                           2            826              332       
genus     Helicobacter                                            33           490              276       
genus     Herbaspirillum                                          3            1324             341       
genus     Hippea                                                  3            979              157       
genus     Hirschia                                                2            1333             222       
genus     Histophilus                                             2            1341              98       
genus     Hydrogenobacter                                         2            1116              52       
genus     Hydrogenobaculum                                        5            989               63       
genus     Hymenobacter                                            3            998              370       
genus     Hyphomicrobium                                          7            966              312       
genus     Idiomarina                                              5            1057             247       
genus     Isoptericola                                            2            1351             168       
genus     Janibacter                                              2            1001             385       
genus     Janthinobacterium                                       4            1001             351       
genus     Jeotgalicoccus                                          2            1124             142       
genus     Jonesia                                                 2            1211             191       
genus     Jonquetella                                             2            987               78       
genus     Kaistia                                                 2            1516             278       
genus     Kandleria                                               3            1026             154       
genus     Kangiella                                               2            1480             165       
genus     Kingella                                                3            1040             614       
genus     Klebsiella                                              29           1359             348       
genus     Labrenzia                                               2            1431             424       
genus     Lachnobacterium                                         2            1164             173       
genus     Lachnospira                                             3            1045             196       
genus     Lactobacillus                                          135           409              155       
genus     Lactococcus                                             14           683              238       
genus     Laribacter                                              2            1579             150       
genus     Leeuwenhoekiella                                        2            1172             263       
genus     Legionella                                              18           695              290       
genus     Leifsonia                                               2            888              212       
genus     Leisingera                                              3            1200             365       
genus     Leptolyngbya                                            3            917              660       
genus     Leptospira                                              4            1176             280       
genus     Leptotrichia                                            7            750              335       
genus     Leucobacter                                             2            948              255       
genus     Leuconostoc                                             15           611              181       
genus     Lewinella                                               2            1073             736       
genus     Listeria                                                24           1137             165       
genus     Loktanella                                              5            1000             308       
genus     Luteimonas                                              2            1277             311       
genus     Lyngbya                                                 2            1111             753       
genus     Lysinibacillus                                          3            1381             323       
genus     Lysobacter                                              2            1235             265       
genus     Magnetospirillum                                        3            1103             429       
genus     Mannheimia                                              4            1320             245       
genus     Maribacter                                              3            905              290       
genus     Marinobacter                                            8            993              273       
genus     Marinobacterium                                         3            1157             339       
genus     Marinomonas                                             4            1256             320       
genus     Mariprofundus                                           2            1329             184       
genus     Maritimibacter                                          2            1288             421       
genus     Massilia                                                3            1363             402       
genus     Megamonas                                               3            1113             288       
genus     Megasphaera                                             7            696              211       
genus     Meiothermus                                             7            852              456       
genus     Mesoplasma                                              5            409              104       
genus     Mesorhizobium                                           20           767              381       
genus     Metallosphaera                                          3            690              177       
genus     Methanobacterium                                        3            797              214       
genus     Methanobrevibacter                                      5            748              267       
genus     Methanocaldococcus                                      5            799              537       
genus     Methanocella                                            3            712              317       
genus     Methanococcus                                           7            710              377       
genus     Methanocorpusculum                                      2            889              135       
genus     Methanolobus                                            2            944              240       
genus     Methanoplanus                                           2            830              217       
genus     Methanosaeta                                            3            700              354       
genus     Methanosarcina                                          3            849              306       
genus     Methanothermobacter                                     2            965               76       
genus     Methanothermococcus                                     2            869              366       
genus     Methanotorris                                           2            891              279       
genus     Methylobacter                                           2            1294             436       
genus     Methylobacterium                                        16           606              394       
genus     Methylococcus                                           2            1613             188       
genus     Methylocystis                                           3            1172             334       
genus     Methylomicrobium                                        2            1316             550       
genus     Methylomonas                                            4            1325             423       
genus     Methylophaga                                            4            1119             219       
genus     Methylophilus                                           4            1346             180       
genus     Methylopila                                             2            1430             482       
genus     Methylosarcina                                          2            1415             498       
genus     Methylosinus                                            3            1300             501       
genus     Methylotenera                                           6            1078             217       
genus     Methyloversatilis                                       6            1297             270       
genus     Methylovorus                                            2            1496             132       
genus     Microbacterium                                          11           623              280       
genus     Microcoleus                                             2            1191             754       
genus     Micromonospora                                          5            921              349       
genus     Microvirga                                              2            1319             353       
genus     Mobiluncus                                              8            830              222       
genus     Moorella                                                2            1125             231       
genus     Moraxella                                               10           915              523       
genus     Morganella                                              2            1883             217       
genus     Mycobacterium                                          100           693              300       
genus     Mycoplasma                                              83           226              133       
genus     Myroides                                                7            948              335       
genus     Natrialba                                               3            716              277       
genus     Natrinema                                               3            796              297       
genus     Natronobacterium                                        2            1012             271       
genus     Natronorubrum                                           2            1039             332       
genus     Neisseria                                               47           887              501       
genus     Neorickettsia                                           2            678               16       
genus     Nesterenkonia                                           2            929              286       
genus     Niabella                                                2            1123             403       
genus     Nisaea                                                  2            1230             423       
genus     Nitratireductor                                         3            1196             283       
genus     Nitratiruptor                                           2            1056             138       
genus     Nitrobacter                                             3            1233             239       
genus     Nitrosococcus                                           2            1342             283       
genus     Nitrosomonas                                            5            957              324       
genus     Nitrosospira                                            2            1303             242       
genus     Nocardia                                                6            799              372       
genus     Nocardioides                                            8            683              299       
genus     Nocardiopsis                                            4            1007             327       
genus     Nostoc                                                  5            995              585       
genus     Novosphingobium                                         5            907              296       
genus     Oceanicaulis                                            2            1398             175       
genus     Oceanicola                                              4            998              439       
genus     Oceanimonas                                             3            1478             267       
genus     Oceanobacillus                                          2            1474             211       
genus     Oceanospirillum                                         2            1479             371       
genus     Ochrobactrum                                            4            1412             260       
genus     Octadecabacter                                          2            1308             284       
genus     Odoribacter                                             2            1031             350       
genus     Oenococcus                                              13           679              136       
genus     Oligella                                                2            1242             186       
genus     Oligotropha                                             2            1592             192       
genus     Olleya                                                  2            1165             249       
genus     Olsenella                                               2            781              213       
genus     Oribacterium                                            5            555              211       
genus     Orientia                                                2            651               94       
genus     Ornithobacterium                                        2            1172             138       
genus     Oscillatoria                                            3            1076             673       
genus     Oxalobacter                                             2            1179             133       
genus     Paenibacillus                                           33           473              180       
genus     Pantoea                                                 10           1403             316       
genus     Parabacteroides                                         6            970              371       
genus     Parachlamydia                                           2            1064             203       
genus     Paracoccus                                              8            917              340       
genus     Paraprevotella                                          2            1113             229       
genus     Parascardovia                                           2            908               87       
genus     Pasteurella                                             8            1083             458       
genus     Patulibacter                                            2            1012             347       
genus     Pectobacterium                                          5            1705             291       
genus     Pediococcus                                             7            664              140       
genus     Pedobacter                                              5            742              322       
genus     Pelobacter                                              2            958              487       
genus     Pelodictyon                                             2            1031             227       
genus     Pelosinus                                               3            1539             333       
genus     Peptoniphilus                                           7            533              231       
genus     Peptostreptococcus                                      3            839              240       
genus     Persephonella                                           3            1036             256       
genus     Phaeobacter                                             8            1087             310       
genus     Photobacterium                                          6            1105             326       
genus     Photorhabdus                                            3            1648             281       
genus     Planctomyces                                            3            790              552       
genus     Planktothrix                                            6            1307             425       
genus     Planococcus                                             2            1321             253       
genus     Pleomorphomonas                                         2            1410             316       
genus     Pleurocapsa                                             2            1138             783       
genus     Polaribacter                                            3            942              301       
genus     Polaromonas                                             4            1001             336       
genus     Polynucleobacter                                        3            968              106       
genus     Pontibacillus                                           2            1303             324       
genus     Pontibacter                                             2            1139             379       
genus     Porphyromonas                                           18           569              346       
genus     Prevotella                                              65           522              281       
genus     Prochlorococcus                                         18           806              240       
genus     Promicromonospora                                       2            1247             525       
genus     Propionibacterium                                       35           632              302       
genus     Propionimicrobium                                       2            1112             105       
genus     Proteus                                                 2            1888             231       
genus     Providencia                                             6            1517             302       
genus     Pseudanabaena                                           2            1172             781       
genus     Pseudoalteromonas                                       20           847              396       
genus     Pseudobutyrivibrio                                      5            873              228       
genus     Pseudoclavibacter                                       2            863              298       
genus     Pseudogulbenkiania                                      3            1447             267       
genus     Pseudomonas                                            182           833              312       
genus     Pseudonocardia                                          4            796              343       
genus     Pseudovibrio                                            2            1687             338       
genus     Pseudoxanthomonas                                       5            1159             369       
genus     Psychrobacter                                           6            1010             372       
genus     Psychroflexus                                           2            1118             211       
genus     Psychromonas                                            5            1062             326       
genus     Pyrobaculum                                             6            594              217       
genus     Pyrococcus                                              6            654              266       
genus     Rahnella                                                2            1981             296       
genus     Ralstonia                                               14           893              294       
genus     Rheinheimera                                            4            1282             378       
genus     Rhizobium                                               40           863              345       
genus     Rhodanobacter                                           3            1566             246       
genus     Rhodobacter                                             8            992              372       
genus     Rhodococcus                                             14           715              302       
genus     Rhodonellum                                             2            1473             372       
genus     Rhodopirellula                                          3            1048             661       
genus     Rhodopseudomonas                                        7            1180             388       
genus     Rhodospirillum                                          3            1208             514       
genus     Rhodothermus                                            3            1379             216       
genus     Rickettsia                                              43           662              110       
genus     Riemerella                                              6            888              396       
genus     Roseburia                                               2            975              303       
genus     Roseiflexus                                             2            1231             441       
genus     Roseobacter                                             7            850              348       
genus     Roseomonas                                              2            1576             318       
genus     Roseovarius                                             3            1134             423       
genus     Rothia                                                  6            884              217       
genus     Rubrivivax                                              3            1586             343       
genus     Rubrobacter                                             2            991              269       
genus     Ruegeria                                                7            996              358       
genus     Ruminococcus                                            13           436              242       
genus     Runella                                                 3            1097             525       
genus     Saccharibacillus                                        2            1247             331       
genus     Saccharomonospora                                       8            788              337       
genus     Salinicoccus                                            2            1179             206       
genus     Salinimicrobium                                         2            1195             260       
genus     Salinispora                                             45           1031             284       
genus     Salmonella                                              21           1529             266       
genus     Saprospira                                              2            1147             326       
genus     Sediminibacterium                                       3            992              328       
genus     Selenomonas                                             21           710              294       
genus     Serratia                                                13           985              293       
genus     Shewanella                                              26           989              339       
genus     Shigella                                                34           1437             348       
genus     Slackia                                                 4            616              193       
genus     Solirubrobacter                                         2            995              398       
genus     Solobacterium                                           2            877              170       
genus     Sphaerochaeta                                           3            685              216       
genus     Sphingobacterium                                        2            996              521       
genus     Sphingobium                                             3            1179             403       
genus     Sphingomonas                                            11           713              351       
genus     Sphingopyxis                                            2            1195             382       
genus     Spirochaeta                                             8            487              211       
genus     Spirosoma                                               4            993              460       
genus     Sporosarcina                                            3            999              269       
genus     Staphylococcus                                          60           773              178       
genus     Staphylothermus                                         2            676              104       
genus     Stenotrophomonas                                        10           1276             380       
genus     Streptococcus                                          226           551              259       
genus     Streptomyces                                            58           506              264       
genus     Sulfitobacter                                           4            1140             294       
genus     Sulfobacillus                                           3            986              278       
genus     Sulfolobus                                              15           621              152       
genus     Sulfurihydrogenibium                                    3            994              341       
genus     Sulfurimonas                                            3            853              245       
genus     Sulfurospirillum                                        3            929              240       
genus     Sutterella                                              3            935              232       
genus     Synechococcus                                           25           554              425       
genus     Synechocystis                                           5            1099             794       
genus     Tannerella                                              2            822              441       
genus     Taylorella                                              4            1069              71       
genus     Tenacibaculum                                           2            1057             272       
genus     Teredinibacter                                          10           1162             360       
genus     Tetragenococcus                                         2            953              183       
genus     Thalassospira                                           3            1406             326       
genus     Thauera                                                 6            1175             334       
genus     Thermacetogenium                                        2            1344             157       
genus     Thermaerobacter                                         2            1204             181       
genus     Thermanaerovibrio                                       2            1136             117       
genus     Thermoanaerobacter                                      13           976              195       
genus     Thermoanaerobacterium                                   4            1117             147       
genus     Thermobifida                                            2            1421             225       
genus     Thermococcus                                            9            552              286       
genus     Thermocrinis                                            2            941              515       
genus     Thermocrispum                                           2            1264             288       
genus     Thermodesulfatator                                      2            1149             333       
genus     Thermodesulfobacterium                                  3            960              243       
genus     Thermodesulfovibrio                                     3            999              215       
genus     Thermogladius                                           2            711               60       
genus     Thermoplasma                                            2            733              167       
genus     Thermoproteus                                           3            600              281       
genus     Thermosipho                                             2            1009             148       
genus     Thermotoga                                              8            768              325       
genus     Thermus                                                 14           841              311       
genus     Thioalkalimicrobium                                     2            1175             103       
genus     Thioalkalivibrio                                        70           1059             270       
genus     Thiobacillus                                            3            1205             209       
genus     Thiomicrospira                                          8            954              243       
genus     Thiomonas                                               3            1202             366       
genus     Thiothrix                                               4            1003             417       
genus     Tolumonas                                               2            1431             200       
genus     Treponema                                               28           326              173       
genus     Turicibacter                                            2            1183             236       
genus     Ureaplasma                                              15           372               51       
genus     Variovorax                                              7            1114             351       
genus     Veillonella                                             13           757              219       
genus     Verrucomicrobium                                        3            697              466       
genus     Vibrio                                                  70           1084             381       
genus     Vulcanisaeta                                            2            713              173       
genus     Weissella                                               6            534              171       
genus     Wigglesworthia                                          2            679               9        
genus     Wohlfahrtiimonas                                        2            1335              78       
genus     Wolbachia                                               8            427              275       
genus     Xanthobacter                                            3            1394             374       
genus     Xanthomonas                                             16           1163             401       
genus     Xenorhabdus                                             2            1608             267       
genus     Xylella                                                 10           1207             178       
genus     Yersinia                                                35           1383             341       
genus     Zymomonas                                               3            1142             133       
species   Acetobacter pasteurianus                                9            1384             160       
species   Achromobacter piechaudii                                2            1606             428       
species   Achromobacter xylosoxidans                              2            1503             445       
species   Acidaminococcus intestini                               2            1109             140       
species   Acidithiobacillus caldus                                2            1196             153       
species   Acidithiobacillus ferrooxidans                          2            1293             128       
species   Acidovorax avenae                                       2            1633             327       
species   Acinetobacter baumanni                                  5            1413             231       
species   Acinetobacter baumannii                                 20           1018             298       
species   Acinetobacter baylyi                                    2            1608             195       
species   Acinetobacter calcoaceticus                             5            1444             252       
species   Acinetobacter johnsonii                                 2            1439             204       
species   Acinetobacter junii                                     4            1336             222       
species   Acinetobacter lwoffii                                   3            1363             221       
species   Acinetobacter nosocomialis                              2            1542             214       
species   Acinetobacter radioresistens                            5            1354             199       
species   Actinobacillus pleuropneumoniae                         13           1332             210       
species   Actinobaculum schaalii                                  2            951              128       
species   Actinomyces graevenitzii                                2            1014             144       
species   Actinomyces naeslundii                                  2            1068             299       
species   Actinomyces neuii                                       2            1053             132       
species   Actinomyces odontolyticus                               2            1061             179       
species   Aeromonas hydrophila                                    3            1847             312       
species   Aeromonas veronii                                       6            1752             329       
species   Aggregatibacter actinomycetemcomitans                   10           1164             217       
species   Agrobacterium tumefaciens                               2            1574             278       
species   Alicycliphilus denitrificans                            2            1650             258       
species   Alicyclobacillus acidocaldarius                         2            1329             157       
species   Alloscardovia omnicolens                                2            950              116       
species   Alteromonas macleodii                                   4            1539             274       
species   Amycolatopsis mediterranei                              3            1557             526       
species   Anabaena circinalis                                     2            1357             362       
species   Anaerococcus prevotii                                   2            900              143       
species   Anaeromyxobacter dehalogenans                           2            1441             335       
species   Anoxybacillus flavithermus                              2            1366             163       
species   Archaeoglobus fulgidus                                  2            975              111       
species   Arcobacter butzleri                                     4            1067             144       
species   Arthrobacter nicotinovorans                             2            1382             287       
species   Arthrospira platensis                                   2            1432             419       
species   Atopobium vaginae                                       2            714              165       
species   Azotobacter vinelandii                                  3            1930             269       
species   Bacillus amyloliquefaciens                              9            1568             226       
species   Bacillus anthracis                                      11           1465             354       
species   Bacillus cereus                                         20           1114             319       
species   Bacillus coagulans                                      4            1365             245       
species   Bacillus licheniformis                                  4            1711             246       
species   Bacillus megaterium                                     3            1495             292       
species   Bacillus methanolicus                                   2            1444             206       
species   Bacillus pumilus                                        2            1707             218       
species   Bacillus subtilis                                       14           1489             247       
species   Bacillus thuringiensis                                  11           1205             357       
species   Bacteroides caccae                                      2            1239             256       
species   Bacteroides dorei                                       4            1172             271       
species   Bacteroides eggerthii                                   2            1171             205       
species   Bacteroides fragilis                                    10           1128             303       
species   Bacteroides massiliensis                                2            1340             274       
species   Bacteroides ovatus                                      6            1115             317       
species   Bacteroides stercoris                                   2            1202             210       
species   Bacteroides thetaiotaomicron                            6            1177             313       
species   Bacteroides uniformis                                   2            1214             253       
species   Bacteroides vulgatus                                    5            1162             307       
species   Bacteroides xylanisolvens                               12           1025             325       
species   Bankia setacea                                          2            1388             332       
species   Bartonella clarridgeiae                                 2            990               52       
species   Bartonella doshiae                                      2            1022              73       
species   Bartonella elizabethae                                  3            1021              88       
species   Bartonella grahamii                                     2            1010              95       
species   Bartonella quintana                                     2            945               55       
species   Bartonella tamiae                                       2            1379              94       
species   Bartonella vinsonii                                     4            964               71       
species   Bartonella washoensis                                   2            1014              79       
species   Bdellovibrio bacteriovorus                              2            1015             305       
species   Bifidobacterium adolescentis                            3            886              116       
species   Bifidobacterium animalis                                9            871              113       
species   Bifidobacterium bifidum                                 5            952              140       
species   Bifidobacterium breve                                   6            871              166       
species   Bifidobacterium dentium                                 3            991              156       
species   Bifidobacterium longum                                  15           750              214       
species   Bifidobacterium pseudolongum                            2            933              123       
species   Blautia producta                                        2            1444             376       
species   Blautia wexlerae                                        2            1092             270       
species   Bordetella holmesii                                     2            1523             215       
species   Bordetella pertussis                                    2            1599             225       
species   Borrelia afzelii                                        2            598               23       
species   Borrelia burgdorferi                                    7            567               36       
species   Borrelia garinii                                        3            596               51       
species   Brachyspira hyodysenteriae                              2            1143             201       
species   Brachyspira pilosicoli                                  4            951              213       
species   Bradyrhizobium elkanii                                  6            1117             415       
species   Bradyrhizobium japonicum                                9            1153             389       
species   Brevibacillus laterosporus                              2            1538             311       
species   Brucella abortus                                        20           1513             206       
species   Brucella canis                                          7            1561             163       
species   Brucella ceti                                           4            1586             299       
species   Brucella melitensis                                     20           1435             270       
species   Brucella ovis                                           9            1599             181       
species   Brucella pinnipedialis                                  2            1625             189       
species   Brucella suis                                           16           1524             276       
species   Buchnera aphidicola                                     10           380               35       
species   Burkholderia cenocepacia                                5            1585             398       
species   Burkholderia cepacia                                    5            1353             330       
species   Burkholderia mallei                                     9            1503             397       
species   Burkholderia mimosarum                                  2            1813             442       
species   Burkholderia multivorans                                4            1688             361       
species   Burkholderia pseudomallei                               12           1626             455       
species   Butyrivibrio fibrisolvens                               4            1083             302       
species   Butyrivibrio proteoclasticus                            2            1016             327       
species   Caldicellulosiruptor kristjanssonii                     3            1326             159       
species   Campylobacter coli                                      20           955              188       
species   Campylobacter curvus                                    2            1090              92       
species   Campylobacter fetus                                     2            1143              80       
species   Campylobacter jejuni                                    20           903              161       
species   Campylobacter showae                                    2            1098             118       
species   Campylobacter upsaliensis                               3            1032             103       
species   Candidatus Pelagibacter ubique                          10           779              128       
species   Candidatus Pelagibacter-like SAR11                      3            911               76       
species   Capnocytophaga ochracea                                 3            1077             205       
species   Caulobacter crescentus                                  2            1670             221       
species   Cellulomonas flavigena                                  2            1110             325       
species   Chlamydia muridarum                                     3            683               35       
species   Chlamydia psittaci                                      20           613               74       
species   Chlamydia trachomatis                                   20           641               41       
species   Chlamydophila pneumoniae                                5            683               57       
species   Chlamydophila psittaci                                  7            706               40       
species   Chlorobium phaeobacteroides                             2            1081             255       
species   Citrobacter freundii                                    3            1937             327       
species   Clavibacter michiganensis                               2            1152             228       
species   Clostridium acetobutylicum                              3            1498             242       
species   Clostridium beijerinckii                                2            1312             318       
species   Clostridium bolteae                                     5            1147             316       
species   Clostridium botulinum                                   15           653              197       
species   Clostridium butyricum                                   3            1300             285       
species   Clostridium clariflavum                                 2            1344             273       
species   Clostridium clostridioforme                             7            995              304       
species   Clostridium difficile                                   20           1098             329       
species   Clostridium glycolicum                                  2            1385             238       
species   Clostridium kluyveri                                    2            1377             212       
species   Clostridium pasteurianum                                2            1184             276       
species   Clostridium perfringens                                 3            1152             185       
species   Clostridium sporogenes                                  2            1302             242       
species   Clostridium symbiosum                                   2            1222             322       
species   Clostridium thermocellum                                5            1325             239       
species   Comamonas testosteroni                                  3            1563             349       
species   Corynebacterium accolens                                2            1192             206       
species   Corynebacterium aurimucosum                             2            1240             186       
species   Corynebacterium diphtheriae                             15           1041             134       
species   Corynebacterium efficiens                               2            1320             210       
species   Corynebacterium glucuronolyticum                        3            1217             176       
species   Corynebacterium glutamicum                              6            1184             228       
species   Corynebacterium halotolerans                            2            1353             183       
species   Corynebacterium jeikeium                                2            1143             157       
species   Corynebacterium matruchotii                             2            1191             181       
species   Corynebacterium pseudotuberculosis                      14           1001             123       
species   Corynebacterium ulcerans                                3            1221             112       
species   Corynebacterium urealyticum                             2            1146             117       
species   Coxiella burnetii                                       5            1047             146       
species   Cupriavidus metallidurans                               2            1706             419       
species   Cupriavidus necator                                     2            1517             379       
species   Cupriavidus taiwanensis                                 3            1681             365       
species   Dechloromonas agitata                                   2            1533             220       
species   Dehalococcoides mccartyi                                4            803               50       
species   Deinococcus radiodurans                                 2            1383             206       
species   Delftia acidovorans                                     2            1757             421       
species   Desulfovibrio africanus                                 3            1285             284       
species   Desulfovibrio alaskensis                                2            1327             223       
species   Desulfovibrio desulfuricans                             2            941              423       
species   Desulfovibrio vulgaris                                  3            1187             344       
species   Dickeya dadantii                                        3            1728             307       
species   Dorea longicatena                                       2            1005             208       
species   Edwardsiella tarda                                      2            1903             174       
species   Ehrlichia ruminantium                                   3            760               58       
species   Elizabethkingia anophelis                               3            1251             240       
species   Ensifer fredii                                          2            1548             357       
species   Ensifer medicae                                         5            1601             343       
species   Ensifer meliloti                                        15           1320             381       
species   Enterobacter aerogenes                                  2            2126             298       
species   Enterobacter cloacae                                    6            1787             306       
species   Enterococcus casseliflavus                              4            1174             221       
species   Enterococcus faecalis                                   20           792              298       
species   Enterococcus faecium                                    20           885              257       
species   Enterococcus gallinarum                                 2            1257             191       
species   Eremococcus coleocola                                   2            922              109       
species   Erwinia amylovora                                       3            1878             177       
species   Erwinia pyrifoliae                                      2            1942             184       
species   Escherichia coli                                        20           1628             307       
species   Escherichia fergusonii                                  2            2134             277       
species   Eubacterium cellulosolvens                              2            1078             198       
species   Eubacterium saburreum                                   2            1186             223       
species   Exiguobacterium sibiricum                               2            1429             175       
species   Exiguobacterium undae                                   2            1484             173       
species   Facklamia hominis                                       2            955              100       
species   Finegoldia magna                                        5            878              111       
species   Francisella noatunensis                                 6            904              235       
species   Francisella noatunensis noatunensis                     2            1070             209       
species   Francisella novicida                                    4            1052             152       
species   Francisella philomiragia                                6            1127             132       
species   Francisella tularensis                                  20           850              176       
species   Fusobacterium necrophorum                               2            1080             117       
species   Fusobacterium nucleatum                                 6            884              256       
species   Gallibacterium anatis                                   2            1519             168       
species   Gardnerella vaginalis                                   14           621              237       
species   Gemella haemolysans                                     2            961              126       
species   Geobacillus debilis                                     2            1380             195       
species   Geobacter sulfurreducens                                2            1487             199       
species   Glaciecola agarilytica                                  2            1802             312       
species   Gluconacetobacter diazotrophicus                        2            1506             190       
species   Gordonia amicalis                                       2            1448             324       
species   Gordonia polyisoprenivorans                             3            1452             366       
species   Haemophilus ducreyi                                     4            1128             128       
species   Haemophilus haemolyticus                                3            1281             149       
species   Haemophilus influenzae                                  17           924              157       
species   Haemophilus parainfluenzae                              5            1176             631       
species   Haemophilus parasuis                                    2            1385             136       
species   Halalkalicoccus jeotgali                                2            1003             212       
species   Haloarcula californiae                                  2            1047             260       
species   Haloarcula vallismortis                                 2            1075             244       
species   Halobiforma lacisalsi                                   2            1026             320       
species   Haloferax denitrificans                                 2            1052             231       
species   Haloferax mucosum                                       2            1030             193       
species   Haloferax sulfurifontis                                 2            1054             237       
species   Haloferax volcanii                                      3            864              230       
species   Haloquadratum walsbyi                                   3            798              192       
species   Helicobacter cetorum                                    2            927              162       
species   Helicobacter pylori                                     20           773              143       
species   Histophilus somni                                       2            1341              98       
species   Hydrogenobacter thermophilus                            2            1116              52       
species   Hyphomicrobium denitrificans                            2            1390             196       
species   Isoptericola variabilis                                 2            1351             168       
species   Jonquetella anthropi                                    2            987               78       
species   Kandleria vitulina                                      3            1026             154       
species   Klebsiella oxytoca                                      5            1725             377       
species   Klebsiella pneumoniae                                   20           1598             383       
species   Lachnobacterium bovis                                   2            1164             173       
species   Lachnospira multipara                                   3            1045             196       
species   Lactobacillus acidophilus                               3            800              127       
species   Lactobacillus amylovorus                                2            865              112       
species   Lactobacillus brevis                                    4            752              203       
species   Lactobacillus buchneri                                  5            853              186       
species   Lactobacillus casei                                     16           772              222       
species   Lactobacillus crispatus                                 8            762              178       
species   Lactobacillus delbrueckii                               7            742              159       
species   Lactobacillus fermentum                                 3            949              129       
species   Lactobacillus gasseri                                   5            692              131       
species   Lactobacillus helveticus                                4            731              148       
species   Lactobacillus iners                                     15           639              125       
species   Lactobacillus jensenii                                  5            813              106       
species   Lactobacillus johnsonii                                 4            777              130       
species   Lactobacillus paracasei                                 3            1022             225       
species   Lactobacillus reuteri                                   9            829              185       
species   Lactobacillus rhamnosus                                 10           952              246       
species   Lactobacillus ruminis                                   2            989              143       
species   Lactobacillus salivarius                                5            864              162       
species   Lactococcus garvieae                                    4            927              157       
species   Lactococcus lactis                                      10           856              190       
species   Laribacter hongkongensis                                2            1579             150       
species   Legionella longbeachae                                  2            1434             256       
species   Legionella pneumophila                                  8            1140             213       
species   Legionella sainthelensi                                 2            1272             299       
species   Leptospira meyeri                                       2            1272             278       
species   Leptotrichia goodfellowii                               2            1086             182       
species   Leuconostoc citreum                                     4            908              102       
species   Leuconostoc gelidum                                     2            985              105       
species   Leuconostoc kimchii                                     2            990               97       
species   Leuconostoc mesenteroides                               3            870              110       
species   Listeria monocytogenes                                  20           1262             179       
species   Loktanella vestfoldensis                                2            1360             189       
species   Lysinibacillus fusiformis                               2            1610             299       
species   Mannheimia haemolytica                                  3            1446             156       
species   Mariprofundus ferrooxydans                              2            1329             184       
species   Megasphaera elsdenii                                    2            1168             145       
species   Megasphaera genomosp.                                   2            973              196       
species   Mesorhizobium ciceri                                    3            1605             386       
species   Mesorhizobium loti                                      6            1317             375       
species   Methanobrevibacter smithii                              3            932               82       
species   Methanococcus maripaludis                               4            961               83       
species   Methylobacterium extorquens                             4            1402             302       
species   Methylococcus capsulatus                                2            1613             188       
species   Methylotenera mobilis                                   2            1353             143       
species   Methylotenera versatilis                                2            1251             231       
species   Methyloversatilis universalis                           3            1615             262       
species   Mobiluncus curtisii                                     4            1009             115       
species   Mobiluncus mulieris                                     4            980              165       
species   Moraxella catarrhalis                                   8            1131             113       
species   Mycobacterium abscessus                                 20           1230             333       
species   Mycobacterium avium                                     3            1306             324       
species   Mycobacterium bovis                                     4            1386             231       
species   Mycobacterium canettii                                  4            1378             260       
species   Mycobacterium gilvum                                    2            1474             320       
species   Mycobacterium intracellulare                            3            1375             278       
species   Mycobacterium leprae                                    2            1053             195       
species   Mycobacterium marinum                                   2            1415             358       
species   Mycobacterium massiliense                               11           1291             291       
species   Mycobacterium rhodesiae                                 2            1202             411       
species   Mycobacterium smegmatis                                 2            1151             407       
species   Mycobacterium tuberculosis                              20           1077             383       
species   Mycoplasma agalactiae                                   2            457               44       
species   Mycoplasma arginini                                     2            361              170       
species   Mycoplasma bovis                                        3            447               52       
species   Mycoplasma canis                                        5            460               37       
species   Mycoplasma fermentans                                   2            506               49       
species   Mycoplasma gallisepticum                                12           451               45       
species   Mycoplasma genitalium                                   2            435               21       
species   Mycoplasma hominis                                      2            411               42       
species   Mycoplasma hyopneumoniae                                3            417               47       
species   Mycoplasma hyorhinis                                    5            427               49       
species   Mycoplasma leachii                                      2            551               49       
species   Mycoplasma mycoides                                     4            476               64       
species   Mycoplasma pneumoniae                                   3            448               33       
species   Mycoplasma synoviae                                     2            457               39       
species   Myroides odoratimimus                                   6            1001             318       
species   Natronobacterium gregoryi                               2            1012             271       
species   Natronorubrum tibetense                                 2            1039             332       
species   Neisseria flavescens                                    2            1305             164       
species   Neisseria gonorrhoeae                                   14           1201             205       
species   Neisseria meningitidis                                  20           997              216       
species   Novosphingobium nitrogenifigens                         2            1642             232       
species   Oceanicaulis alexandrii                                 2            1398             175       
species   Ochrobactrum intermedium                                2            1521             251       
species   Oenococcus oeni                                         12           770              112       
species   Oligotropha carboxidovorans                             2            1592             192       
species   Orientia tsutsugamushi                                  2            651               94       
species   Ornithobacterium rhinotracheale                         2            1172             138       
species   Oxalobacter formigenes                                  2            1179             133       
species   Paenibacillus alvei                                     3            1429             356       
species   Paenibacillus mucilaginosus                             2            1584             433       
species   Pantoea ananatis                                        4            1893             263       
species   Parabacteroides merdae                                  3            1201             260       
species   Parachlamydia acanthamoebae                             2            1064             203       
species   Parascardovia denticolens                               2            908               87       
species   Pasteurella multocida                                   5            1400             149       
species   Pectobacterium carotovorum                              2            1949             285       
species   Pediococcus acidilactici                                4            836              109       
species   Pediococcus pentosaceus                                 2            936               98       
species   Pelosinus fermentans                                    2            1545             299       
species   Peptoniphilus lacrimalis                                2            937               98       
species   Peptostreptococcus anaerobius                           2            1024             136       
species   Persephonella lauensis                                  2            1194             108       
species   Phaeobacter gallaeciensis                               4            1371             329       
species   Photobacterium profundum                                2            1714             406       
species   Polynucleobacter necessarius                            3            968              106       
species   Porphyromonas asaccharolytica                           2            1014             131       
species   Porphyromonas gingivalis                                8            974              194       
species   Prevotella amnii                                        2            985              155       
species   Prevotella bivia                                        2            1077             150       
species   Prevotella brevis                                       2            1125             185       
species   Prevotella buccae                                       2            1106             220       
species   Prevotella dentalis                                     2            1171             188       
species   Prevotella denticola                                    3            1015             186       
species   Prevotella intermedia                                   2            1108             149       
species   Prevotella maculosa                                     2            1057             211       
species   Prevotella melaninogenica                               2            1039             225       
species   Prevotella micans                                       2            1048             165       
species   Prevotella oralis                                       2            1159             165       
species   Prevotella oris                                         3            1006             202       
species   Prevotella ruminicola                                   2            1088             224       
species   Prevotella timonensis                                   2            983              206       
species   Prevotella veroralis                                    2            986              200       
species   Prochlorococcus marinus                                 13           862              183       
species   Propionibacterium acidifaciens                          2            539              376       
species   Propionibacterium acidipropionici                       2            1277             233       
species   Propionibacterium acnes                                 20           1053             218       
species   Propionibacterium avidum                                2            1195             150       
species   Propionimicrobium lymphophilum                          2            1112             105       
species   Proteus mirabilis                                       2            1888             231       
species   Providencia alcalifaciens                               2            1875             218       
species   Providencia stuartii                                    2            1918             220       
species   Pseudoalteromonas haloplanktis                          2            1596             348       
species   Pseudoalteromonas luteoviolacea                         2            1493             389       
species   Pseudoalteromonas piscicida                             2            1903             366       
species   Pseudobutyrivibrio ruminis                              3            937              238       
species   Pseudomonas aeruginosa                                  19           1617             469       
species   Pseudomonas brassicacearum                              2            1982             393       
species   Pseudomonas chlororaphis                                2            1904             402       
species   Pseudomonas fluorescens                                 9            1154             347       
species   Pseudomonas fulva                                       2            1488             484       
species   Pseudomonas mendocina                                   3            1635             338       
species   Pseudomonas monteilii                                   3            1761             372       
species   Pseudomonas putida                                      13           1246             410       
species   Pseudomonas stutzeri                                    13           1189             403       
species   Pseudomonas syringae                                    20           1439             395       
species   Pseudomonas thermotolerans                              2            1731             219       
species   Pseudomonas umsongensis                                 2            1945             378       
species   Pseudomonas viridiflava                                 3            1876             420       
species   Pseudoxanthomonas suwonensis                            3            1424             280       
species   Pyrococcus furiosus                                     2            981               99       
species   Ralstonia pickettii                                     2            1715             287       
species   Ralstonia solanacearum                                  4            1543             320       
species   Rhizobium etli                                          2            1571             331       
species   Rhizobium leguminosarum                                 20           1104             354       
species   Rhodobacter sphaeroides                                 5            1409             281       
species   Rhodococcus equi                                        2            1456             325       
species   Rhodococcus erythropolis                                2            1456             402       
species   Rhodococcus pyridinivorans                              2            1329             319       
species   Rhodonellum psychrophilum                               2            1473             372       
species   Rhodopseudomonas palustris                              7            1180             388       
species   Rhodospirillum rubrum                                   2            1731             250       
species   Rhodothermus marinus                                    3            1379             216       
species   Rickettsia canadensis                                   2            783               35       
species   Rickettsia massiliae                                    2            794               67       
species   Rickettsia prowazekii                                   5            753               44       
species   Rickettsia rickettsii                                   14           737               72       
species   Rickettsia slovaca                                      2            807               50       
species   Rickettsia typhi                                        3            786               24       
species   Riemerella anatipestifer                                5            999              139       
species   Rothia dentocariosa                                     2            1057             145       
species   Rothia mucilaginosa                                     3            990              143       
species   Rubrivivax benzoatilyticus                              2            1846             310       
species   Ruminococcus albus                                      2            1187             284       
species   Ruminococcus flavefaciens                               5            783              287       
species   Ruminococcus gnavus                                     2            1114             199       
species   Saccharomonospora azurea                                2            1323             314       
species   Salinispora arenicola                                   20           1171             326       
species   Salinispora pacifica                                    20           1005             278       
species   Salinispora tropica                                     5            1307             311       
species   Salmonella enterica                                     20           1643             283       
species   Saprospira grandis                                      2            1147             326       
species   Selenomonas artemidis                                   2            1227             134       
species   Selenomonas bovis                                       2            1210             191       
species   Selenomonas ruminantium                                 4            1010             375       
species   Selenomonas sputigena                                   2            1404             138       
species   Serratia marcescens                                     2            1727             324       
species   Serratia plymuthica                                     5            1990             304       
species   Serratia proteamaculans                                 2            2115             304       
species   Shewanella baltica                                      8            1677             338       
species   Shigella boydii                                         6            1605             348       
species   Shigella dysenteriae                                    4            1643             335       
species   Shigella flexneri                                       18           1512             333       
species   Shigella sonnei                                         5            1936             302       
species   Solobacterium moorei                                    2            877              170       
species   Sphingomonas melonis                                    3            1562             203       
species   Sphingomonas phyllosphaerae                             2            1437             248       
species   Spirochaeta thermophila                                 2            1122             152       
species   Staphylococcus aureus                                   20           1169             170       
species   Staphylococcus epidermidis                              20           933              208       
species   Staphylococcus hominis                                  2            1209             107       
species   Staphylococcus lugdunensis                              3            1270             131       
species   Staphylococcus pseudintermedius                         2            1324             134       
species   Stenotrophomonas maltophilia                            8            1441             396       
species   Streptococcus agalactiae                                20           807              204       
species   Streptococcus anginosus                                 5            990              160       
species   Streptococcus australis                                 2            1197             124       
species   Streptococcus bovis                                     5            976              140       
species   Streptococcus dysgalactiae                              5            982              204       
species   Streptococcus equi                                      4            961              136       
species   Streptococcus gallolyticus                              3            1151             131       
species   Streptococcus infantarius                               2            1097             118       
species   Streptococcus infantis                                  4            971              131       
species   Streptococcus intermedius                               3            1049             115       
species   Streptococcus mitis                                     11           743              256       
species   Streptococcus mutans                                    8            1053             121       
species   Streptococcus oralis                                    9            871              196       
species   Streptococcus parasanguinis                             6            999              203       
species   Streptococcus parauberis                                3            969              126       
species   Streptococcus pneumoniae                                20           845              160       
species   Streptococcus pseudopneumoniae                          3            1102             236       
species   Streptococcus pseudoporcinus                            2            1166             114       
species   Streptococcus pyogenes                                  20           885              150       
species   Streptococcus salivarius                                4            1021             130       
species   Streptococcus sanguinis                                 13           877              335       
species   Streptococcus suis                                      14           852              161       
species   Streptococcus thermophilus                              6            971               96       
species   Streptococcus urinalis                                  2            1107             100       
species   Streptomyces cattleya                                   3            1460             495       
species   Sulfobacillus acidophilus                               2            1273             192       
species   Sulfolobus acidocaldarius                               3            819              115       
species   Sulfolobus islandicus                                   9            778              149       
species   Sulfolobus solfataricus                                 2            822              116       
species   Sutterella wadsworthensis                               3            935              232       
species   Synechococcus elongatus                                 2            1468             121       
species   Taylorella asinigenitalis                               2            1125              58       
species   Taylorella equigenitalis                                2            1154              53       
species   Teredinibacter turnerae                                 8            1640             312       
species   Thauera linaloolentis                                   2            1773             294       
species   Thermacetogenium phaeum                                 2            1344             157       
species   Thermoanaerobacterium thermosaccharolyticum             2            1317             136       
species   Thermobifida fusca                                      2            1421             225       
species   Thermus oshimai                                         2            1196             112       
species   Thermus scotoductus                                     2            1098             162       
species   Thermus thermophilus                                    4            1100             123       
species   Thioalkalivibrio thiocyanoxidans                        2            1159             330       
species   Thiobacillus denitrificans                              2            1290             203       
species   Treponema denticola                                     9            954              221       
species   Treponema pallidum                                      3            717               44       
species   Treponema vincentii                                     2            946              178       
species   Ureaplasma parvum                                       5            420               35       
species   Ureaplasma urealyticum                                  10           386               50       
species   Variovorax paradoxus                                    5            1314             368       
species   Veillonella atypica                                     3            1145             136       
species   Veillonella parvula                                     2            1174              97       
species   Vibrio alginolyticus                                    5            1283             392       
species   Vibrio cholerae                                         20           1729             348       
species   Vibrio fischeri                                         2            1814             227       
species   Vibrio harveyi                                          3            1674             373       
species   Vibrio mimicus                                          2            1752             276       
species   Vibrio parahaemolyticus                                 12           1733             363       
species   Vibrio splendidus                                       2            1757             310       
species   Vibrio vulnificus                                       5            1802             386       
species   Wigglesworthia glossinidia                              2            679               9        
species   Wohlfahrtiimonas chitiniclastica                        2            1335              78       
species   Wolbachia endosymbiont of Culex quinquefasciatus        2            747               56       
species   Xanthomonas axonopodis                                  5            1627             365       
species   Xanthomonas campestris                                  5            1623             336       
species   Xanthomonas oryzae                                      3            1627             339       
species   Xylella fastidiosa                                      10           1207             178       
species   Yersinia enterocolitica                                 5            1868             316       
species   Yersinia pestis                                         20           1683             330       
species   Yersinia pseudotuberculosis                             4            1975             263       
species   Zymomonas mobilis                                       3            1142             133