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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 423 47

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 253 37

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 159 28

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 155 52

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 96 28

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

Repositories

Showing 10 of 185 repositories
  • zmesh Public

    Marching Cubes & Mesh Simplification on multi-label 3D images.

    seung-lab/zmesh’s past year of commit activity
    C++ 63 GPL-3.0 8 2 2 Updated Jul 22, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 49 GPL-3.0 23 26 5 Updated Jul 22, 2025
  • kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    seung-lab/kimimaro’s past year of commit activity
    C++ 159 GPL-3.0 28 16 0 Updated Jul 22, 2025
  • cross-section Public

    Tools for computing properties of cross sections of 3D voxelized images.

    seung-lab/cross-section’s past year of commit activity
    C++ 5 LGPL-3.0 2 2 3 Updated Jul 22, 2025
  • ca3_paper Public
    seung-lab/ca3_paper’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 21, 2025
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 43 BSD-3-Clause 8 15 1 Updated Jul 19, 2025
  • microviewer Public

    Multiplatform 3D numpy image browser based viewer with voxel painting.

    seung-lab/microviewer’s past year of commit activity
    JavaScript 15 LGPL-2.1 1 5 0 Updated Jul 16, 2025
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap’s past year of commit activity
    C++ 60 LGPL-3.0 7 2 0 Updated Jul 15, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 24 Apache-2.0 336 91 37 Updated Jul 15, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 155 BSD-3-Clause 52 83 6 Updated Jul 15, 2025

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